View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1640_high_24 (Length: 235)

Name: NF1640_high_24
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1640_high_24
NF1640_high_24
[»] chr2 (8 HSPs)
chr2 (1-222)||(32643928-32644148)
chr2 (3-104)||(32644414-32644515)
chr2 (59-104)||(1353122-1353167)
chr2 (66-101)||(14473557-14473592)
chr2 (164-211)||(18899248-18899295)
chr2 (160-211)||(33263496-33263547)
chr2 (60-104)||(13490251-13490295)
chr2 (159-211)||(31846478-31846530)
[»] chr6 (5 HSPs)
chr6 (152-211)||(10110650-10110709)
chr6 (160-211)||(1462728-1462779)
chr6 (160-211)||(6789090-6789141)
chr6 (60-100)||(7213344-7213384)
chr6 (160-211)||(16439429-16439480)
[»] chr5 (5 HSPs)
chr5 (160-211)||(7124228-7124279)
chr5 (159-211)||(35701961-35702013)
chr5 (160-211)||(37797459-37797510)
chr5 (160-214)||(21238203-21238257)
chr5 (161-211)||(29716216-29716266)
[»] chr1 (14 HSPs)
chr1 (156-211)||(51107912-51107967)
chr1 (158-211)||(3593987-3594040)
chr1 (158-211)||(5208611-5208664)
chr1 (159-211)||(4006077-4006129)
chr1 (159-211)||(11578453-11578505)
chr1 (159-211)||(18246881-18246933)
chr1 (160-211)||(9174600-9174651)
chr1 (160-211)||(26758319-26758370)
chr1 (159-214)||(34019706-34019761)
chr1 (160-211)||(41354150-41354201)
chr1 (158-211)||(47370880-47370933)
chr1 (160-211)||(1242637-1242688)
chr1 (160-211)||(8148059-8148110)
chr1 (160-211)||(25254278-25254329)
[»] chr7 (6 HSPs)
chr7 (60-101)||(10017672-10017713)
chr7 (160-211)||(37915398-37915449)
chr7 (160-211)||(4639219-4639270)
chr7 (160-211)||(42611255-42611306)
chr7 (160-211)||(43172826-43172877)
chr7 (159-211)||(21024684-21024736)
[»] chr4 (7 HSPs)
chr4 (158-211)||(50517831-50517884)
chr4 (159-211)||(24965803-24965855)
chr4 (159-222)||(25014058-25014121)
chr4 (158-214)||(26449233-26449289)
chr4 (160-222)||(4511358-4511420)
chr4 (160-209)||(41206719-41206768)
chr4 (159-211)||(56423415-56423467)
[»] scaffold0002 (1 HSPs)
scaffold0002 (160-211)||(16137-16188)
[»] chr8 (3 HSPs)
chr8 (160-211)||(19484922-19484973)
chr8 (160-214)||(18985065-18985119)
chr8 (158-211)||(8029164-8029217)
[»] chr3 (4 HSPs)
chr3 (160-211)||(8599665-8599716)
chr3 (160-211)||(49296823-49296874)
chr3 (159-214)||(27261987-27262042)
chr3 (56-104)||(30548019-30548067)
[»] scaffold0037 (1 HSPs)
scaffold0037 (161-214)||(36903-36956)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32644148 - 32643928
Alignment:
Q  1 catgtgaatttcaaacagagttagtcaatcgagtgactgaaatgtaatttactataacatgagtcacattttggactaacttaaaacttttaaaacataa 100  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||| ||| |  ||||||||| |||||||||||||||||||||||||||||||||||    
T  32644148 catgtgaatttcaaacataattagtcaatcgggtgactgaaatgtaacttattgcaacatgagtaacattttggactaacttaaaacttttaaaacataa 32644049  T
Q  101 gagagtttactagtttctaacatgcatgccgacttaaaactagtttcttccctccatagcaaggtttttcaactcgaaagtttacctcaacttcttttac 200  Q
    ||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32644048 gagagtttactagtttctaac-tgcatgctggcttaaaattagtttcttccctccatagtaaggtttttcaactcgaaagtttacctcaacttcttttac 32643950  T
Q  201 ctaggtaaacttgagttgtaaa 222  Q
    ||||||||||||||||||||||    
T  32643949 ctaggtaaacttgagttgtaaa 32643928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 32644515 - 32644414
Alignment:
Q  3 tgtgaatttcaaacagagttagtcaatcgagtgactgaaatgtaatttactataacatgagtcacattttggactaacttaaaacttttaaaacataaga 102  Q
    ||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  32644515 tgtgaatttcaaacatagttagtcaatcgagtgactgaaatgaaacttactgtaacatgagtaatattttggactaacttcaaacttttaaaacataaga 32644416  T
Q  103 ga 104  Q
    ||    
T  32644415 ga 32644414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 1353122 - 1353167
Alignment:
Q  59 atgagtcacattttggactaacttaaaacttttaaaacataagaga 104  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  1353122 atgagtaacattttggaccaacttgaaacttttaaaacataagaga 1353167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 14473592 - 14473557
Alignment:
Q  66 acattttggactaacttaaaacttttaaaacataag 101  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14473592 acattttggacaaacttaaaacttttaaaacataag 14473557  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 18899248 - 18899295
Alignment:
Q  164 gtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  18899248 gttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 18899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 33263547 - 33263496
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||    
T  33263547 caaggttttacaactcgagagtttacctcaacttgttttagctatgtaaact 33263496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 13490295 - 13490251
Alignment:
Q  60 tgagtcacattttggactaacttaaaacttttaaaacataagaga 104  Q
    ||||| || |||||||| ||||||||||||||||||| |||||||    
T  13490295 tgagtaacgttttggaccaacttaaaacttttaaaacgtaagaga 13490251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 31846478 - 31846530
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| |||||| |||||||  |||| ||||||||||||    
T  31846478 gcaaggttttgcaactcgagagtttatctcaactcattttgcctaggtaaact 31846530  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 10110650 - 10110709
Alignment:
Q  152 ctccatagcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||| |||||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  10110650 ctccttagcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 10110709  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 1462728 - 1462779
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  1462728 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 1462779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 6789141 - 6789090
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  6789141 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 6789090  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 7213344 - 7213384
Alignment:
Q  60 tgagtcacattttggactaacttaaaacttttaaaacataa 100  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  7213344 tgagtaacattttagactaacttaaaacttttaaaacataa 7213384  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 16439480 - 16439429
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||||||||||| ||||||||||||||  ||||  |||||||||||    
T  16439480 caaggtttttcaactcgagagtttacctcaactcgttttgtctaggtaaact 16439429  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 7124228 - 7124279
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  7124228 caaggttttgcaactcgaaagtttacctcaactcgttttacctaggtaaact 7124279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 35702013 - 35701961
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| ||||||||||||||  |||||| ||||||||||    
T  35702013 gcaaggttttacaactcgagagtttacctcaactcgttttacttaggtaaact 35701961  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 37797459 - 37797510
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||| ||||||    
T  37797459 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaact 37797510  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 21238203 - 21238257
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttga 214  Q
    ||||||||| |||||||| ||||||||||||||  ||||| ||| ||||||||||    
T  21238203 caaggttttacaactcgagagtttacctcaactcgttttaactatgtaaacttga 21238257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 29716216 - 29716266
Alignment:
Q  161 aaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||| |||||||| ||||||||||||||  |||| ||||||||||||    
T  29716216 aaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaact 29716266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 51107967 - 51107912
Alignment:
Q  156 atagcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  51107967 atagcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 51107912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 3594040 - 3593987
Alignment:
Q  158 agcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  3594040 agcaaggttttacaactcgagagtttacctcaactcgttttacctaggtaaact 3593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 5208611 - 5208664
Alignment:
Q  158 agcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  5208611 agcaaggttttacaactcgagagtttacctcaactcgttttacctaggtaaact 5208664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 4006129 - 4006077
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  4006129 gcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 4006077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 11578453 - 11578505
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  11578453 gcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 11578505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 18246881 - 18246933
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  18246881 gcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 18246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 9174651 - 9174600
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  9174651 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 9174600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 26758370 - 26758319
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  26758370 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 26758319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 34019761 - 34019706
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttga 214  Q
    |||||||||| |||||||| ||||||||||||||| ||||| ||| ||||||||||    
T  34019761 gcaaggttttacaactcgagagtttacctcaacttattttagctatgtaaacttga 34019706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 41354201 - 41354150
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  41354201 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 41354150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 47370880 - 47370933
Alignment:
Q  158 agcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||||| |||||||| ||||||||||||||  |||| ||||||||||||    
T  47370880 agcaaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaact 47370933  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 1242637 - 1242688
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||| ||||||    
T  1242637 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaact 1242688  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 8148110 - 8148059
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  ||||| |||||||||||    
T  8148110 caaggttttgcaactcgagagtttacctcaactcgttttagctaggtaaact 8148059  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 25254329 - 25254278
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||| ||||||  |||||||||||||||||    
T  25254329 caaggttttacaactcgagagtttacttcaactcgttttacctaggtaaact 25254278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 10017713 - 10017672
Alignment:
Q  60 tgagtcacattttggactaacttaaaacttttaaaacataag 101  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  10017713 tgagtaacattttggactaacttaaaacttttaaaacataag 10017672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 37915398 - 37915449
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  37915398 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 37915449  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 4639219 - 4639270
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  ||||| |||||||||||    
T  4639219 caaggttttgcaactcgagagtttacctcaactcgttttaactaggtaaact 4639270  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 42611306 - 42611255
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||| ||||||||||||    
T  42611306 caaggttttacaactcgagagtttacctcaactcgttttgcctaggtaaact 42611255  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 43172877 - 43172826
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||| ||||||||||||    
T  43172877 caaggttttacaactcgagagtttacctcaactcattttgcctaggtaaact 43172826  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 21024736 - 21024684
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| ||||||||||||||  ||||| ||| |||||||    
T  21024736 gcaaggttttacaactcgagagtttacctcaactagttttagctatgtaaact 21024684  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 50517884 - 50517831
Alignment:
Q  158 agcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  50517884 agcaaggttttgcaactcgaaagtttacctcaactcattttgcctaggtaaact 50517831  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 24965803 - 24965855
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  24965803 gcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 24965855  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 25014121 - 25014058
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttgagttgtaaa 222  Q
    |||||||||| |||||||| ||||||||||||||  ||||| ||| |||||||||| |||||||    
T  25014121 gcaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaacttgaattgtaaa 25014058  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 26449289 - 26449233
Alignment:
Q  158 agcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttga 214  Q
    ||||||||||| |||||||| ||||||||||||||  ||||| ||| ||||||||||    
T  26449289 agcaaggttttacaactcgatagtttacctcaactcgttttagctatgtaaacttga 26449233  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 4511358 - 4511420
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttgagttgtaaa 222  Q
    ||||||||| |||||||| ||||||||||||||  ||||  ||||||||| |||||| |||||    
T  4511358 caaggttttgcaactcgagagtttacctcaactctttttgactaggtaaatttgagtcgtaaa 4511420  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 41206719 - 41206768
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaa 209  Q
    ||||||||| |||||| | ||||||||||||||  |||||||||||||||    
T  41206719 caaggttttacaactcaagagtttacctcaactcgttttacctaggtaaa 41206768  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 56423415 - 56423467
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    |||||||||| |||||||| ||||||||||||||  ||||| ||| |||||||    
T  56423415 gcaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 56423467  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 16137 - 16188
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  16137 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 16188  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 19484973 - 19484922
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  19484973 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 19484922  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 18985119 - 18985065
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttga 214  Q
    ||||||||| |||||||| ||||||||||||||| ||||  ||||||||||||||    
T  18985119 caaggttttgcaactcgagagtttacctcaacttgttttgtctaggtaaacttga 18985065  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 8029164 - 8029217
Alignment:
Q  158 agcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||||| |||||||| ||||||||||||||  |||  ||||||||||||    
T  8029164 agcaaggttttgcaactcgagagtttacctcaactcgtttcgcctaggtaaact 8029217  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 8599716 - 8599665
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  8599716 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 8599665  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 49296874 - 49296823
Alignment:
Q  160 caaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaact 211  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  49296874 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaact 49296823  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 27262042 - 27261987
Alignment:
Q  159 gcaaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttga 214  Q
    |||||||||| |||||||| ||||||||||||||  ||||| ||| ||||||||||    
T  27262042 gcaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaacttga 27261987  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 30548019 - 30548067
Alignment:
Q  56 aacatgagtcacattttggactaacttaaaacttttaaaacataagaga 104  Q
    ||||||||| || |||||||| ||||| ||||||||||||| |||||||    
T  30548019 aacatgagtaacgttttggaccaacttgaaacttttaaaacgtaagaga 30548067  T

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Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 36903 - 36956
Alignment:
Q  161 aaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttga 214  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| |||||||    
T  36903 aaggttttgcaactcgaaagtttacctcaactcattttgcctaggtcaacttga 36956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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