View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1640_high_3 (Length: 393)
Name: NF1640_high_3
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 23706658 - 23706283
Alignment:
| Q |
7 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23706658 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
23706559 |
T |
|
| Q |
107 |
ttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23706558 |
ttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
23706459 |
T |
|
| Q |
207 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23706458 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
23706359 |
T |
|
| Q |
307 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23706358 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
23706283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 23725114 - 23724739
Alignment:
| Q |
7 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23725114 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
23725015 |
T |
|
| Q |
107 |
ttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23725014 |
ttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
23724915 |
T |
|
| Q |
207 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23724914 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
23724815 |
T |
|
| Q |
307 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23724814 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
23724739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 23743570 - 23743195
Alignment:
| Q |
7 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23743570 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
23743471 |
T |
|
| Q |
107 |
ttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23743470 |
ttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
23743371 |
T |
|
| Q |
207 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23743370 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
23743271 |
T |
|
| Q |
307 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23743270 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
23743195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 23773115 - 23772740
Alignment:
| Q |
7 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23773115 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
23773016 |
T |
|
| Q |
107 |
ttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23773015 |
ttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
23772916 |
T |
|
| Q |
207 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23772915 |
atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgc |
23772816 |
T |
|
| Q |
307 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23772815 |
catccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
23772740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 4135399 - 4135046
Alignment:
| Q |
7 |
tatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4135399 |
tatatccattccatcttagttaattcttct-------cgtaactcatgaaaacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggt |
4135307 |
T |
|
| Q |
107 |
ttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatata |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4135306 |
ttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcat----------------gatctatggatatatata |
4135223 |
T |
|
| Q |
207 |
--atcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||| | ||| |
|
|
| T |
4135222 |
taatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaatcgattctcgatgataaacaaattccgaattgttgtggttgt |
4135123 |
T |
|
| Q |
305 |
gccatccttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
382 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4135122 |
gccat-cttaagtgatctgtgaaaattcagaattgttttggcttccattgttgcctttaggttcagacttttcttctt |
4135046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 22420029 - 22419933
Alignment:
| Q |
209 |
caattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtg |
305 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| |||||||||||||||||| | ||||||| |||||||||||| |||||| ||||| |||||| |
|
|
| T |
22420029 |
caattttatggttttggtaaaatgaaaatcctttaaatttaattgaattggtagtcaattctccgtgataaacaaatccagaatcgttgtggctgtg |
22419933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 22420296 - 22420206
Alignment:
| Q |
12 |
ccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattgga |
102 |
Q |
| |
|
|||||||||||||| ||||||||| || |||| || |||||||||||| |||||||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
22420296 |
ccattccatcttagctaattcctcatatggatcgcaattcatgaagacatttcttgtttatgtcaaatttataaaattgatctcaattgga |
22420206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 22420174 - 22420102
Alignment:
| Q |
104 |
ggtttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatc |
176 |
Q |
| |
|
||||| ||||| || ||||| |||||||| | |||||||||||||| | ||||| || |||||||||||||| |
|
|
| T |
22420174 |
ggtttatttctaccagtggaattttaggtgtgagaattgactttctgaaatgttgtccatttggtgcattatc |
22420102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University