View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_high_5 (Length: 345)
Name: NF1640_high_5
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 41623682 - 41623351
Alignment:
| Q |
1 |
agtaccaatatccaaaccaagacaaatccttctcccaacaccaaatggcatcatttttactcctgtaacaccagttatatcagcttcctcatccttagaa |
100 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41623682 |
agtaccaatagccaaaccaggacaaatccttctcccaacaccaaatggcatcatttttactcctgtaacaccagttatatcagcttcctcacccttagaa |
41623583 |
T |
|
| Q |
101 |
agaaacctttcaggatcaaacttttcagggttggaccataatttagggtcctcacctatgccagctgtatatacctcaacatttgcatcaattggtatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623582 |
agaaacctttcaggatcaaacttttcagggttggaccataatttagggtcctcacctatgccagctgtatatacctcaacatttgcatcaattggtatat |
41623483 |
T |
|
| Q |
201 |
cataacctcctaatgtggtaggttcagtaacagcatgtgttagtacaaaatgtgttggtggatgcttccttaataactctttcaccacagcttgtaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623482 |
cataacctcctaatgtggtaggttcagtaacagcatgtgttagtacaaaatgtgttggtggatgcttccttaataactctttcaccacagcttgtaaata |
41623383 |
T |
|
| Q |
301 |
aggcattttctcaacatctttttcttctactt |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
41623382 |
aggcattttctcaacatctttttcttctactt |
41623351 |
T |
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