View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_high_6 (Length: 336)
Name: NF1640_high_6
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 42470950 - 42470743
Alignment:
| Q |
1 |
agagccaattactatgaaagaatgatggagatagtagtttatttggggttcctaagaacaatgatgacagaatctccacgaagaaacattttgcttatga |
100 |
Q |
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| T |
42470950 |
agagccaattactatgaaagaatgatggagatagtagtttatttggggttcctaagaacaatgatgacagaatctccacgaagaaacattttgcttatga |
42470851 |
T |
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| Q |
101 |
atctatctttgtttactggctgagcctttttctttcctttaccagtctttggaacctgatacaacacaagcaaaaca-tttaacttgtgtaacaagcaag |
199 |
Q |
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| T |
42470850 |
atctatctttgtttactggctgagcctttttctttcctttaccagtctttggaacctgatacaacacaagcaaaacattttaacttgtgtaacaagcaag |
42470751 |
T |
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| Q |
200 |
cagagaag |
207 |
Q |
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|||||||| |
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| T |
42470750 |
cagagaag |
42470743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 42470678 - 42470632
Alignment:
| Q |
272 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgc |
318 |
Q |
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| T |
42470678 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgc |
42470632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 44692331 - 44692487
Alignment:
| Q |
24 |
gatggagatagtagtttatttggggttcctaagaacaatgatgacagaatctccacgaagaaacattttgcttatgaatctatctttgtttactggctga |
123 |
Q |
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| T |
44692331 |
gatggagatactagcttatttggggttcctaagaacaatgatgacagaatctccacgaaggaacattttgctgatgaaacgatccttgttgactggctga |
44692430 |
T |
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| Q |
124 |
gcctttttctttcctttaccagtctttggaacctgatacaacacaagcaaaacattta |
181 |
Q |
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| T |
44692431 |
gccttcttctttcctttaccggtcttaggcacctgatac-atacaagcagaacattta |
44692487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 44692559 - 44692605
Alignment:
| Q |
272 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgc |
318 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
44692559 |
gcatacctcagtccacatttcccggacattttcaagaaccatattgc |
44692605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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