View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_low_1 (Length: 619)
Name: NF1640_low_1
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 423
Target Start/End: Original strand, 8565355 - 8565755
Alignment:
| Q |
23 |
agcttatagatgaagtaattgaatgagagccacataatccaacaatttcatcttttttgaatcaacatgtccattgcaagttcttttgaaagcattaatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8565355 |
agcttatagatgaagtaattgaatgagagccacataatccaacaatttcatcttttttgaatcaacatgtccattgcaagttcttttgaaagcattaatg |
8565454 |
T |
|
| Q |
123 |
gtggatacgttgtttctattgccaagaataaaggttaccaaactgatactctaagttcatatttcatgcatccacaagagaatataggtgttgttcttgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8565455 |
gtggatacgttgtttctattgccaagaataaaggttaccaaactgatactctaagttcatatttcatgcatccacaagagaatataggtgttattcttgt |
8565554 |
T |
|
| Q |
223 |
atccctttgttatttggaaataactaccattcttggtgaacaaaaatcaaaaatcgcatcattatatcaatttgtaattgttaaataatatgttaaannn |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8565555 |
atccctttgttatttggaaataactaccattcttggtgaacaaaaatcaaaaatcgcatcattatatcaatttgtaattgttaaataatatgttaaattt |
8565654 |
T |
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| Q |
323 |
nnnnnaaggaaaataatatgttaattggtaattgttattttataatnnnnnnnnnntgaaatgttgactatatgcttgcatacattttgaagaaaagttg |
422 |
Q |
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| T |
8565655 |
tttttaaggaaaataatatgttaattggtaattgttattttataataaaaaaaaaatgaaatgttgactatatgcttacatacattttgaagaaaagttg |
8565754 |
T |
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| Q |
423 |
a |
423 |
Q |
| |
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| |
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| T |
8565755 |
a |
8565755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 514 - 606
Target Start/End: Original strand, 8565844 - 8565936
Alignment:
| Q |
514 |
ctcatgagttttcaaaatttcatattatcgactttctcaaattgtggtataaaaatttgtttccgcatatataaatacttaaattccacaggt |
606 |
Q |
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| T |
8565844 |
ctcatgagttttcaaaatttcatattatcgactttctcaaattgtggtataaaaatttgtttccgcatatataaatacttaaattccacaggt |
8565936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 3073318 - 3073363
Alignment:
| Q |
23 |
agcttatagatgaagtaattgaatgagagccacataatccaacaat |
68 |
Q |
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| T |
3073318 |
agcttatagatgaagtaattgaatgagagccacataatccaacaat |
3073363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 29470510 - 29470467
Alignment:
| Q |
23 |
agcttatagatgaagtaattgaatgagagccacataatccaaca |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29470510 |
agcttatagatgaagtaattgaatgagagccacataatccaaca |
29470467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 3076819 - 3076858
Alignment:
| Q |
27 |
tatagatgaagtaattgaatgagagccacataatccaaca |
66 |
Q |
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| T |
3076819 |
tatagatgaagtaattgaatgagagccacataatccaaca |
3076858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 15113728 - 15113684
Alignment:
| Q |
23 |
agcttatagatgaagtaattgaatgagagccacataatccaacaa |
67 |
Q |
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| T |
15113728 |
agcttatagatgaaggaattgaatgagagccacataatccaacaa |
15113684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 15242055 - 15242101
Alignment:
| Q |
23 |
agcttatagatgaagtaattgaatgagagccacataatccaacaatt |
69 |
Q |
| |
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||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
15242055 |
agcttatagatgaaggaattgaatgagaaccacataatccaacaatt |
15242101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 36648231 - 36648195
Alignment:
| Q |
560 |
gtataaaaatttgtttccgcatatataaatacttaaa |
596 |
Q |
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||||||||| |||||||| |||||||||||||||||| |
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| T |
36648231 |
gtataaaaagttgtttccacatatataaatacttaaa |
36648195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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