View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1640_low_11 (Length: 327)
Name: NF1640_low_11
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 1461720 - 1461406
Alignment:
| Q |
9 |
gatatcatctttacttacctgataagcaacacctaacgatcgaagtccacgctcagcaaacctatcaatcaccgcatgagcccttttactcacattccct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1461720 |
gatatcatctttacttacctgataagcaacacctaacgatcgaagtccacgttcagcaaacctatcaatcaccgcatgagcccttttactcacattctct |
1461621 |
T |
|
| Q |
109 |
ttgcagttacaaagcttcaatatctgaaataacataacatcatgtgttagttagtcatcttattaaacataacaaagataacaccagggtctagcgtgag |
208 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1461620 |
ttgcagttacaaagctccaatatctgaaataacataacatcatgtcttagttagtcatcttattaaacataacaaagataacaccagggtctagcgtaag |
1461521 |
T |
|
| Q |
209 |
tggttgatgctcatagtgtgtgagtgttgtaaaccttggaattcaattcctattgataaagaaaacacataacaagttgaaactcatatctacctgttca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1461520 |
tggttgatgctcatagtgtgtgagtgttgtaaaccttggaattcaattcctattgataaagaaaacacataacaagttgaaactcatatctacctgttca |
1461421 |
T |
|
| Q |
309 |
ggagcccctttgcta |
323 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1461420 |
ggagcccctttgcta |
1461406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 1497687 - 1497740
Alignment:
| Q |
34 |
gcaacacctaacgatcgaagtccacgctcagcaaacctatcaatcaccgcatga |
87 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
1497687 |
gcaacacctaaagatcgaagtccacgctccgcaaacttatcaatcactgcatga |
1497740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 26789212 - 26789084
Alignment:
| Q |
9 |
gatatcatctttacttacctgataagcaacacctaacgatcgaagtccacgctcagcaaacctatcaatcaccgcatgagcccttttactcacattccct |
108 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| || |
|
|
| T |
26789212 |
gatatcatctttacttacctgacaagcaacaccgagcgatcgaagtccacgctcagcaaacctatcaatcactgcatgaacccttttcctcacattctct |
26789113 |
T |
|
| Q |
109 |
ttgcagttacaaagcttcaatatctgaaa |
137 |
Q |
| |
|
|||||||||||||| | |||||||||||| |
|
|
| T |
26789112 |
ttgcagttacaaagttccaatatctgaaa |
26789084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 26789036 - 26788987
Alignment:
| Q |
274 |
cacataacaagttgaaactcatatctacctgttcaggagcccctttgcta |
323 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26789036 |
cacataacaagttgaaactcatatttacctgttcaggagcccctttgcta |
26788987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University