View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1640_low_16 (Length: 304)
Name: NF1640_low_16
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 30477991 - 30477726
Alignment:
| Q |
19 |
taagtatcaaaaatatttcctagaatttaattaatgccaatcatatataaaacttccgatatgcttcattttctctcacagaataacattttggaaccat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30477991 |
taagtatcaaaaatatttcctagaatttaat----gccaatcatatataaaacttccgatatgcttcattttctctcacagaataacattttggaaccat |
30477896 |
T |
|
| Q |
119 |
ccgtgttgtggggtatgcgaatttctttgatatggggtctgctgaggacccaattattaatgtgtccatgttgtattctaacctagcttatctaaatttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30477895 |
ccgtgttgtggggtatgcgaatttctttgatatggggtctgctgaggacccaattattaatgtgtccttgttgtattctaacctagcttatctaaatttg |
30477796 |
T |
|
| Q |
219 |
aattagtttctatattatatgatttttctttcctcattaatttgtttctcagtgcatggaaggtgcaaat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30477795 |
aattagtttctatattatatgatttttctttcctcattaatttgtttctcagtgcatggaaggtgcaaat |
30477726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University