View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_low_18 (Length: 283)
Name: NF1640_low_18
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_18 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 11755978 - 11755769
Alignment:
| Q |
26 |
agcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagtactgaagataacaatttttcttcaacaattcttaggatt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11755978 |
agcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttttcttcaacaattcttaggatt |
11755879 |
T |
|
| Q |
126 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggcca |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11755878 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcctcagaactagctttcaacctttcatcttgggcca |
11755779 |
T |
|
| Q |
226 |
ccagaagttt |
235 |
Q |
| |
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|||||||||| |
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|
| T |
11755778 |
ccagaagttt |
11755769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 12093957 - 12094166
Alignment:
| Q |
26 |
agcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagtactgaagataacaatttttcttcaacaattcttaggatt |
125 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
12093957 |
agcagagaccaaagtaggtgaaaaccaaaagagaataaggctgtatgccttttgtaataacactgaagataacaatttttgttcaacaattcttaggatt |
12094056 |
T |
|
| Q |
126 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggcca |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
12094057 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatattcaccagagcctcagaactagccttcaacctttcatcttgggcca |
12094156 |
T |
|
| Q |
226 |
ccagaagttt |
235 |
Q |
| |
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|||||||||| |
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| T |
12094157 |
ccagaagttt |
12094166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 11739837 - 11739939
Alignment:
| Q |
134 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
233 |
Q |
| |
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|||||||||||| ||||||||||||||||||| | |||||||| ||||| ||||| || |||||||| || |||||||||||||| ||||| |||||| |
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| T |
11739837 |
atttttaaaatgggtttcccatgcatataacttcaacactttcacattcactagagcctcggaactagcctttaacctttcatcttgtgccacgagaagt |
11739936 |
T |
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| Q |
234 |
ttg |
236 |
Q |
| |
|
||| |
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|
| T |
11739937 |
ttg |
11739939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 11710547 - 11710647
Alignment:
| Q |
134 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
233 |
Q |
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|
|||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||| ||||| || || ||||| ||||||| |||| |
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| T |
11710547 |
atttttaaaatggttttcccatgcatataacttgagcactttcatattcacaagagcctcggaactagccttcaatctctcgtcttgtgccaccataagt |
11710646 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
|
| |
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|
| T |
11710647 |
t |
11710647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 11674018 - 11674117
Alignment:
| Q |
129 |
atggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccacca |
228 |
Q |
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|
||||||||||||||||| ||||||||||||||| ||| | ||||||||| ||||| ||||| |||||||| ||||| || || |||||||| ||||||| |
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| T |
11674018 |
atggaatttttaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccacca |
11674117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 11663044 - 11662946
Alignment:
| Q |
136 |
ttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagtt |
234 |
Q |
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|
|||||||||| ||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||| ||||| || || ||||| ||||||| ||||| |
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| T |
11663044 |
ttttaaaatgtgtttcccatgcatatagctttagcactttcatactcacaagagcctcagaactagccttcaatctctcgtcttgtgccaccataagtt |
11662946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 11632002 - 11632104
Alignment:
| Q |
134 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
233 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||| | ||||||||| ||||| ||||| || |||||||| || || || |||||||| ||||||| |||| |
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| T |
11632002 |
atttttaaaatgattttcccacgcatacaacttcaacactttcatattcacaagagcctccgaactagcctttaatctctcatcttgtgccaccataagt |
11632101 |
T |
|
| Q |
234 |
ttg |
236 |
Q |
| |
|
||| |
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|
| T |
11632102 |
ttg |
11632104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 11618230 - 11618130
Alignment:
| Q |
134 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
233 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | ||||||||| ||||| ||||| || ||||| || || || || |||||||| ||||||| |||| |
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| T |
11618230 |
atttttaaaatgtgtttcccatgcatatagcttcaacactttcatattcacaagagcctccgaactcgcctttaatctctcatcttgcgccaccataagt |
11618131 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
|
| |
|
|
| T |
11618130 |
t |
11618130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 44811617 - 44811529
Alignment:
| Q |
148 |
tttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagtttg |
236 |
Q |
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||||||||||||||||||| ||||| ||||| ||||| ||||| |||||| |||| ||||| || |||||||| || |||| ||||||| |
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| T |
44811617 |
tttcccatgcatataacttcagcaccttcatattcacaagagcctcagaagtagccttcaatctctcatcttgtgctaccataagtttg |
44811529 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 8951 - 8995
Alignment:
| Q |
134 |
atttttaaaatgcatttcccatgcatataactttagcactttcat |
178 |
Q |
| |
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|||||||||||| ||||||||||||||||||| | ||||||||| |
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| T |
8951 |
atttttaaaatgtgtttcccatgcatataacttcaacactttcat |
8995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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