View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1640_low_19 (Length: 280)
Name: NF1640_low_19
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 38850258 - 38850527
Alignment:
| Q |
1 |
aaaggcaacaagaattcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaaca |
100 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850258 |
aaaggcaacaggaatgcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaacg |
38850357 |
T |
|
| Q |
101 |
cacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaac |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38850358 |
cacaccggtatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagtgaaccgaactatcaacaccaccaac |
38850457 |
T |
|
| Q |
201 |
cttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctctg |
270 |
Q |
| |
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||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38850458 |
cttttcaaagcactccttaaatttttccctcctactctttgaatgcctcacaaacatgatactctctctg |
38850527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 38325932 - 38325664
Alignment:
| Q |
1 |
aaaggcaacaagaattcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaaca |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||| |||||| |||| ||||||||||||| ||||||||||| |
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| T |
38325932 |
aaaggcaacaagaatgcacagatcttttctactcttttctactcttctaccgaaggacataactcataattatcctcatacaagtgaagactttcaaaca |
38325833 |
T |
|
| Q |
101 |
cacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaac |
200 |
Q |
| |
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||| ||| ||||||||||| |||||||||| || ||||||||| ||| ||||||||| ||| ||| |||||||| |||||||| ||||||||||| |
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| T |
38325832 |
cacgccgatatttaagagcactttcaagcatcaaataagttgagttcagactcatagacgagtcctgatgcaagcgaacggaactatcgacaccaccaac |
38325733 |
T |
|
| Q |
201 |
cttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctct |
269 |
Q |
| |
|
||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
38325732 |
cttttcaatgcattccttaaatttctcccttctactctttgaatgcctcacaaacatgatgctctctct |
38325664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 38321182 - 38320918
Alignment:
| Q |
1 |
aaaggcaacaagaattcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaaca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||| |
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| T |
38321182 |
aaaggcaacaagaacacacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtgaagactttcaaaca |
38321083 |
T |
|
| Q |
101 |
cacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaac |
200 |
Q |
| |
|
|||||| ||||||||||| |||||||||| || ||||||||| ||| | ||||||| || |||| ||| |||||||| |||||||||||||||||||| |
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| T |
38321082 |
cacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaagcgaactgaactatcaacaccaccaac |
38320983 |
T |
|
| Q |
201 |
cttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactct |
265 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||||||| ||| | ||||| ||| |||| |
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|
| T |
38320982 |
cttttcaacgcactccttaaatttttgccttcgactctttgaatccctaaaaaacaagatgctct |
38320918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38313678 - 38313409
Alignment:
| Q |
1 |
aaaggcaacaagaattcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaaca |
100 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||| |||||||| ||||||||||||||||| |||||||||| |
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|
| T |
38313678 |
aaaggtaacaagaatgcacaaatcttttctactcttttccagtcttctgccgcaggacatgaatcataatcatcatcatacaagtgaagactttcaaacg |
38313579 |
T |
|
| Q |
101 |
cacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaac |
200 |
Q |
| |
|
||| | | ||||||||||| |||| ||||| || ||||||||| ||| |||||||| ||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
38313578 |
cacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgcaagcgaaccgaactatcaacaccaccaac |
38313479 |
T |
|
| Q |
201 |
cttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctctg |
270 |
Q |
| |
|
||||||| ||||||||||||| || || ||||||||| |||||||| ||||||| || ||||||||| |
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|
| T |
38313478 |
cttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctctg |
38313409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 38300437 - 38300169
Alignment:
| Q |
1 |
aaaggcaacaagaattcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaaca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
38300437 |
aaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaaca |
38300338 |
T |
|
| Q |
101 |
cacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaac |
200 |
Q |
| |
|
||| ||| ||||||||||| |||||||||| ||||||||| ||| || ||| | |||| ||| |||||||| |||| ||||||||||||||| |
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| T |
38300337 |
cacgccgatatttaagagcactttcaagcattgaataagttgagttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaac |
38300238 |
T |
|
| Q |
201 |
cttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactctctct |
269 |
Q |
| |
|
|||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||| |
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|
| T |
38300237 |
ctttgcaatacactccttaaatttttcccttccactctttgaatgcctcacaaacatgatgctatctct |
38300169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 38309084 - 38308820
Alignment:
| Q |
1 |
aaaggcaacaagaattcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaaca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||| ||||||||||||| ||||||||| |
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|
| T |
38309084 |
aaaggcaacaagaatgcacaaatcttttctactcttttccactcttctgccgcaggacatgaatcataaccatcgtcatacaagtgaagactttcaaatg |
38308985 |
T |
|
| Q |
101 |
cacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaac |
200 |
Q |
| |
|
|| | | ||||||||||| |||| ||||| || ||||||||| ||| |||||||| || || | ||| || ||||| |||||||||||||||||||| |
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|
| T |
38308984 |
caagctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatgtctagatgcaaacgaacagaactatcaacaccaccaac |
38308885 |
T |
|
| Q |
201 |
cttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgatactct |
265 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
38308884 |
cttttcaatgcactccttaaatttttccctgtgactctttgatcgcctcacaaacatgatgctct |
38308820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 38317087 - 38316828
Alignment:
| Q |
1 |
aaaggcaacaagaattcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaaca |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||| | || |||||||||| | ||| |||||||||||||||||||||||||||| | |
|
|
| T |
38317087 |
aaaggcagcaagaacgcacaaatcttttcaactcttttccactcatgtgctaaaggacataactggtaattatcatcatacaagtgaaaactttcaaata |
38316988 |
T |
|
| Q |
101 |
cacaccgttatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaac |
200 |
Q |
| |
|
|| ||| ||||||||||| |||||||||| || ||||||||| ||| ||||||||| || |||| ||| | || ||| |||||||||||||||||||| |
|
|
| T |
38316987 |
catgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcaaacagaactatcaacaccaccaac |
38316888 |
T |
|
| Q |
201 |
cttttcacagcactccttaaaattttcccttctactctttgaatgcctcacaaacatgat |
260 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| | ||||||| ||||||||||||||| |
|
|
| T |
38316887 |
cttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgat |
38316828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 38306324 - 38306088
Alignment:
| Q |
33 |
tcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaacacacaccgttatttaagagctctttcaagcaac |
132 |
Q |
| |
|
|||||||||||||| || |||||||| | ||||| | ||||||||||||||||||||||||||||| | ||||||||||| || || |||| | |
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| T |
38306324 |
tcttttccactcttttgcagaaggacacgagacataatcaccatcatacaagtgaaaactttcaaacacatgttgatatttaagagcactatcgagcatc |
38306225 |
T |
|
| Q |
133 |
atataagttgaactcaaactcatagatatatccaaatgtaagcgaaccgaactatcaacaccaccaaccttttcacagcactccttaaaattttcccttc |
232 |
Q |
| |
|
| ||||||||| ||| | ||||||| || |||| ||| |||||||| ||||| |||| |||||||||||||||| |||||||||||| |||| ||||| |
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|
| T |
38306224 |
aaataagttgagttcacagtcatagacatgtccatatgcaagcgaactgaactgtcaataccaccaaccttttcaacgcactccttaaattttttccttc |
38306125 |
T |
|
| Q |
233 |
tactctttgaatgcctcacaaacatgatactctctct |
269 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
38306124 |
tactctttgaatccctcacaaacaagatgctctctct |
38306088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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