View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_low_2 (Length: 564)
Name: NF1640_low_2
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 2491504 - 2491100
Alignment:
| Q |
14 |
aacctgtgttacaaggtgcttacattaagcaatatattctacatacatatcagatgcaaaagaaacataagacaaattgaattaggaaaggaaccccgga |
113 |
Q |
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| T |
2491504 |
aacctgtgttacaaggtgcttacattaagcaatatattctacatacatatcagatgcaaaagaaacataagacaaattgaattaggaaaggaaccccgga |
2491405 |
T |
|
| Q |
114 |
tatgcgacctagttcagagacataaaatgctaagagcaattcccattgggaatttctgtgtttttaagctt---aactaactgttatttgttgtgtttcg |
210 |
Q |
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| T |
2491404 |
tatgcgacctagttcagagacataaaatgctaagagcaattcccattgggagtttctgtgtttttaagcttcttaactaactgttatttgttgtgtttcg |
2491305 |
T |
|
| Q |
211 |
ccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaacctttgcttaaatgtaaaaatatggatttactccatcaaat |
310 |
Q |
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| T |
2491304 |
ccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaacctttgcttaaatgtaaaaatatggatttactccatcaaat |
2491205 |
T |
|
| Q |
311 |
ctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgtgattgaaatcttaaaagcaacatggcatgataagatccac |
410 |
Q |
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| T |
2491204 |
ctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgtgattgaaatcttaaaagcaacatggcataataagatccac |
2491105 |
T |
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| Q |
411 |
ctaat |
415 |
Q |
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| T |
2491104 |
ctaat |
2491100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 436 - 548
Target Start/End: Complemental strand, 2491069 - 2490957
Alignment:
| Q |
436 |
ttaatcatatcattagagaggctcaaatgcagattaaagaaaaagaattctaccggattactataataaaatactgcttttccggttataaagtaatctt |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2491069 |
ttaatcatatcattagagaggctcaaatgcagattaaagaaaaagaattctaccggattactataataaaatactgcttttccggttataaagtaatctt |
2490970 |
T |
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| Q |
536 |
acctgactctttg |
548 |
Q |
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| T |
2490969 |
acctgactctttg |
2490957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 472
Target Start/End: Complemental strand, 2491096 - 2491066
Alignment:
| Q |
442 |
atatcattagagaggctcaaatgcagattaa |
472 |
Q |
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| T |
2491096 |
atatcattagagaggctcaaatgcagattaa |
2491066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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