View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1640_low_22 (Length: 276)

Name: NF1640_low_22
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1640_low_22
NF1640_low_22
[»] chr3 (6 HSPs)
chr3 (110-263)||(22603976-22604129)
chr3 (111-257)||(54377870-54378016)
chr3 (121-241)||(11559337-11559457)
chr3 (121-241)||(11568606-11568726)
chr3 (115-263)||(50093126-50093275)
chr3 (134-174)||(41946892-41946933)
[»] chr2 (8 HSPs)
chr2 (110-263)||(30870576-30870729)
chr2 (111-241)||(8910313-8910443)
chr2 (111-263)||(26353975-26354126)
chr2 (107-263)||(17353664-17353821)
chr2 (110-241)||(41342119-41342251)
chr2 (155-241)||(29453935-29454021)
chr2 (124-259)||(34213789-34213923)
chr2 (127-236)||(21430921-21431033)
[»] chr8 (7 HSPs)
chr8 (111-263)||(4974925-4975077)
chr8 (112-263)||(15075719-15075870)
chr8 (134-262)||(2751910-2752038)
chr8 (111-241)||(9293313-9293443)
chr8 (111-241)||(25381035-25381163)
chr8 (149-263)||(25690445-25690559)
chr8 (130-174)||(20990363-20990407)
[»] chr1 (7 HSPs)
chr1 (111-263)||(25878301-25878453)
chr1 (120-263)||(10918113-10918257)
chr1 (18-99)||(35790996-35791077)
chr1 (126-263)||(28007068-28007206)
chr1 (126-257)||(33372687-33372812)
chr1 (114-263)||(45438551-45438701)
chr1 (146-263)||(32991993-32992110)
[»] chr5 (6 HSPs)
chr5 (111-263)||(26708813-26708966)
chr5 (111-263)||(26978547-26978700)
chr5 (111-263)||(37192853-37193006)
chr5 (111-263)||(29068961-29069112)
chr5 (111-168)||(41250030-41250087)
chr5 (111-173)||(7031194-7031258)
[»] scaffold0092 (1 HSPs)
scaffold0092 (123-221)||(53330-53428)
[»] chr4 (6 HSPs)
chr4 (127-263)||(17028414-17028552)
chr4 (120-263)||(9591976-9592120)
chr4 (196-263)||(22434053-22434120)
chr4 (118-204)||(19898427-19898514)
chr4 (197-263)||(33819529-33819595)
chr4 (134-178)||(22434125-22434169)
[»] chr7 (3 HSPs)
chr7 (110-263)||(23428615-23428768)
chr7 (121-191)||(8544087-8544157)
chr7 (114-241)||(42594030-42594156)
[»] chr6 (2 HSPs)
chr6 (111-263)||(11082797-11082950)
chr6 (112-236)||(291959-292084)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 110 - 263
Target Start/End: Original strand, 22603976 - 22604129
Alignment:
Q  110 ccagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccag 209  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  22603976 ccagtgacggatccagaaattttgataagtgaggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgcgaaaattataccaa 22604075  T
Q  210 ttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22604076 ttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 22604129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 54377870 - 54378016
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||| |||| |||||| |||    
T  54377870 cagtgacaaatccataaattttaataagtggggtcaagttatatcataaaaatttatataaaactttataaatgtgtaagcgtgtgaaagttatacaagt 54377969  T
Q  211 tatatttataattaccctaaaatgttgatttgtttaaaatatttgtc 257  Q
    ||||| ||||||| ||||||||||||||||| || ||||||||||||    
T  54377970 tatatatataattgccctaaaatgttgattttttaaaaatatttgtc 54378016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 11559337 - 11559457
Alignment:
Q  121 tccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttata 220  Q
    |||||||||||| |||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||    
T  11559337 tccagaaattttaataagtgcagtcaagttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagttatatttata 11559436  T
Q  221 attaccctaaaatgttgattt 241  Q
    |||  ||||||||||||||||    
T  11559437 attgtcctaaaatgttgattt 11559457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 11568606 - 11568726
Alignment:
Q  121 tccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttata 220  Q
    |||||||||||| |||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||    
T  11568606 tccagaaattttaataagtgcagtcaagttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagttatatttata 11568705  T
Q  221 attaccctaaaatgttgattt 241  Q
    |||  ||||||||||||||||    
T  11568706 attgtcctaaaatgttgattt 11568726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 115 - 263
Target Start/End: Original strand, 50093126 - 50093275
Alignment:
Q  115 gacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttata 214  Q
    |||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||| ||||||||||||| ||||||||||  |||||||    
T  50093126 gacgaatctagaaattttaataaatggggtcaaattatatcataaaaatttatattaaattttataaacgcgtaagcgtgcgaaaattatataagttata 50093225  T
Q  215 tttataattaccctaaaatgttgatttgtt-taaaatatttgtccatttc 263  Q
     ||| ||||  |||||||||||||||| ||  ||||||||||||||||||    
T  50093226 cttacaattgtcctaaaatgttgattttttaaaaaatatttgtccatttc 50093275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 41946933 - 41946892
Alignment:
Q  134 ataagtggggtcaa-gttatatcataaaaatttatataaaac 174  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  41946933 ataagtggggtcaaagttatatcataaaaatttatataaaac 41946892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 30870729 - 30870576
Alignment:
Q  110 ccagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccag 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||    
T  30870729 ccagtgacggatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacaagcgtaagcgtgcgaaaattatactag 30870630  T
Q  210 ttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30870629 ttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 30870576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 8910443 - 8910313
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||  ||||| || |||||||||| ||||||||||| |||    
T  8910443 cagtgacggatccaaaaattttaataagtggggttaagttatatcataaaaaattatataaaattttataaacacgtaagcgtgcgaaaattatacaagt 8910344  T
Q  211 tatatttataattaccctaaaatgttgattt 241  Q
    ||||||||||||| |||||||||||| ||||    
T  8910343 tatatttataattgccctaaaatgttaattt 8910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 26354126 - 26353975
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||  ||||| ||||||| |||| ||  ||||| |||||||||||||||| ||||||||| ||||| || | |||||||| ||||||||||| |||    
T  26354126 cagtgacagatccaaaaattttaataaatgatgtcaaattatatcataaaaatt-atataaaaccttataaacacataagcgtgcgaaaattatacaagt 26354028  T
Q  211 tatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
     ||||||||||||| ||||||||||||| || || |||||||||||| |||||    
T  26354027 catatttataattatcctaaaatgttgaatttttaaaaatatttgtctatttc 26353975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 17353664 - 17353821
Alignment:
Q  107 catccagtgacgaatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattata 205  Q
    |||| ||||| | ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||  |||| ||| ||| |||||  |||||| ||    
T  17353664 catctagtgatggatccataaattttaataagtggggtcaaagttatatcataaaaatttatataaaactatataaacgtgtatgcgtgcaaaaattgta 17353763  T
Q  206 ccagttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
       ||||| ||||||||| | ||||||||||||||| | ||| |||||| || |||||    
T  17353764 taggttatgtttataattgctctaaaatgttgatttttgtaagatatttttctatttc 17353821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 41342251 - 41342119
Alignment:
Q  110 ccagtgacgaatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattatacca 208  Q
    ||||||||||||||| ||| ||| |||| || |||||| |||||||||||||||||||||||||||  |||| ||| |||||||||  |||||||||       
T  41342251 ccagtgacgaatccaaaaaatttaataactgaggtcaaagttatatcataaaaatttatataaaactatataaacgtgtaagcgtgtaaaaattatatat 41342152  T
Q  209 gttatatttataattaccctaaaatgttgattt 241  Q
    ||||| ||||||||| |  ||||||||||||||    
T  41342151 gttatgtttataattgctttaaaatgttgattt 41342119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 29453935 - 29454021
Alignment:
Q  155 cataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataattaccctaaaatgttgattt 241  Q
    |||||||||||||||||||  ||||| | |||||| ||||  |||||||||| |||||||||||||||| || |||||| |||||||    
T  29453935 cataaaaatttatataaaattttataaatgcgtaaacgtgcaaaaattatacaagttatatttataattgccttaaaatattgattt 29454021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 34213789 - 34213923
Alignment:
Q  124 agaaattttgataagtggggtcaag-ttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataat 222  Q
    |||||||||||||||| | | |||  ||||||||||||||||||||| ||||  |||| | || ||||||||  ||||||||   |||||| ||||||||    
T  34213789 agaaattttgataagtagagacaaaattatatcataaaaatttatatcaaactatataaatgcataagcgtgcaaaaattat-taagttatgtttataat 34213887  T
Q  223 taccctaaaatgttgatttgtttaaaatatttgtcca 259  Q
    | |  |||||||||||||| |||||||||||| ||||    
T  34213888 tgctttaaaatgttgattt-tttaaaatatttttcca 34213923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 21431033 - 21430921
Alignment:
Q  127 aattttgataagtggggtcaa-gttatatcataaaaattta--tataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataatt 223  Q
    |||| |||||||||| ||||| |||||||||||||||||||  |||||| |  |||| ||||||||| |||  ||||| |||  |||||| |||||||||    
T  21431033 aattctgataagtggagtcaaagttatatcataaaaatttatatataaagctatataaacgcgtaagtgtgcaaaaataatataagttatgtttataatt 21430934  T
Q  224 accctaaaatgtt 236  Q
     | ||||||||||    
T  21430933 gctctaaaatgtt 21430921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 4974925 - 4975077
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4974925 cagtgacggatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgcaaaaattataccagt 4975024  T
Q  211 tatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4975025 tatatttataattatcctaaaatgttgatttgtttaaaatatttgtccatttc 4975077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 15075870 - 15075719
Alignment:
Q  112 agtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagtt 211  Q
    ||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  15075870 agtgacggattcagaaattttgataagtgggatcaagttataacataaaaatttatataaaacattatacacgcgtaagcgtgcaaaaattatactagtt 15075771  T
Q  212 atatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15075770 atatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 15075719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 2752038 - 2751910
Alignment:
Q  134 ataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataattaccctaaaat 233  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  2752038 ataagtggggtcaagttatatcataaaaatttatataaaattttatacatgcgtaagcgtgcgaaaattatacaagttatatttatatttaccctaaaat 2751939  T
Q  234 gttgatttgtttaaaatatttgtccattt 262  Q
    |||||| ||||||||||||||||||||||    
T  2751938 gttgatatgtttaaaatatttgtccattt 2751910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 9293313 - 9293443
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| ||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||| ||     
T  9293313 cagtgacggatccaaaaattttaataagggaggtcaagttatatcataaaaatttatataaaattttataaacgcgtaagcgtgcgaaaattatacaagc 9293412  T
Q  211 tatatttataattaccctaaaatgttgattt 241  Q
    ||||||||||||| |||||||||||||||||    
T  9293413 tatatttataattgccctaaaatgttgattt 9293443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 25381163 - 25381035
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccag 209  Q
    |||||||  |||||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||| || |||||||||| ||||||||||  ||    
T  25381163 cagtgacatatccagaaatttt---aagtgtggtcaaagttatattataaaaatttatataaaactttataaactcgtaagcgtgcgaaaattatataag 25381067  T
Q  210 ttatatttataattaccctaaaatgttgattt 241  Q
    |||||||||||||| || ||||||||||||||    
T  25381066 ttatatttataattgccataaaatgttgattt 25381035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 25690559 - 25690445
Alignment:
Q  149 ttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataattaccctaaaatgttgatttgtttaaa 248  Q
    ||||||||||||| || ||||||||| ||||| || | |||||||| ||||||||||| |||||||||||||||| || |||||||||||| | ||| ||    
T  25690559 ttatatcataaaatttaatataaaactttataaactcataagcgtgcgaaaattatacaagttatatttataattgccataaaatgttgatattttttaa 25690460  T
Q  249 atatttgtccatttc 263  Q
    |||||||| ||||||    
T  25690459 atatttgtgcatttc 25690445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 20990363 - 20990407
Alignment:
Q  130 tttgataagtggggtcaagttatatcataaaaatttatataaaac 174  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  20990363 tttgataagtggggttaagttatatcataaaaatttatataaaac 20990407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 25878301 - 25878453
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |    
T  25878301 cagtgacggatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgcaaaaattataccatt 25878400  T
Q  211 tatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25878401 tatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 25878453  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 120 - 263
Target Start/End: Complemental strand, 10918257 - 10918113
Alignment:
Q  120 atccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttat 219  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||||    
T  10918257 atccagaaattttaataagtggggtcaagttatatcatgaaaatttatataaaactttataaacgcgtaagtgtgcgaaaattatacaagttatatttat 10918158  T
Q  220 aattaccctaaaatgttgatttgttt-aaaatatttgtccatttc 263  Q
    |||| | ||||||||||||||| ||| |||||||||||| |||||    
T  10918157 aattgctctaaaatgttgatttttttaaaaatatttgtcaatttc 10918113  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 35791077 - 35790996
Alignment:
Q  18 aatcaaatattgtaaatgtgacgagagtggaatggagtggagtggtgaattatttgtcaagaaaatgttatggagaaaaaca 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  35791077 aatcaaatattgtaaatgtgacgagagtggaatggagtggagtggtgaattatttgtctagaaaatgttctggagaaaaaca 35790996  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 28007068 - 28007206
Alignment:
Q  126 aaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataattac 225  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||  ||||| |  ||||||| || ||||||||||  |||||||||||||||| |    
T  28007068 aaattttaataagtgaggtcaagttatatcataaaaatatatataaaattttataaatacgtaagcatgcgaaaattatataagttatatttataattgc 28007167  T
Q  226 cctaaaatgttgatt-tgtttaaaatatttgtccatttc 263  Q
     |||||||||||||| | |||||||||||||||||||||    
T  28007168 tctaaaatgttgattctttttaaaatatttgtccatttc 28007206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 33372812 - 33372687
Alignment:
Q  126 aaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataattac 225  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||       | ||||| ||||||||||| | |||||||||||||| |    
T  33372812 aaattttaataagtggggtcaagttatatcataaaaatttatataaaactttcta------aatgcgtgcgaaaattatacaaattatatttataattgc 33372719  T
Q  226 cctaaaatgttgatttgttta-aaatatttgtc 257  Q
    ||| |||||||||||| || | |||||||||||    
T  33372718 cct-aaatgttgattttttaataaatatttgtc 33372687  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 263
Target Start/End: Complemental strand, 45438701 - 45438551
Alignment:
Q  114 tgacgaatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagtta 212  Q
    ||||| |||||||||| |  ||||||| |||||| |||||||||||||| ||||| |||||   |||| ||||||||| ||   |||||||||  | |||    
T  45438701 tgacggatccagaaatgtaaataagtgaggtcaaagttatatcataaaattttatttaaaattatataaacgcgtaagtgtataaaaattatataaatta 45438602  T
Q  213 tatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    | ||||||||||| | ||||| ||||||| || ||||||||| | ||||||    
T  45438601 tgtttataattactcaaaaatattgattttttaaaaatattttttcatttc 45438551  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 32992110 - 32991993
Alignment:
Q  146 aagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataattaccctaaaatgttgatttgttt 245  Q
    ||||||||||||||||||||||||||||   |||| |  ||||||| ||| |||||||||  |||||   |||||||| |  |||||| ||||||| |||    
T  32992110 aagttatatcataaaaatttatataaaaatatataaatacgtaagcatgaaaaaattatataagttaagattataatttctttaaaattttgatttattt 32992011  T
Q  246 aaaatatttgtccatttc 263  Q
    ||||||||| | ||||||    
T  32992010 aaaatattttttcatttc 32991993  T

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Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 26708966 - 26708813
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| || ||||||||||| |||    
T  26708966 cagtgacggatccaaaaattttaataagtggggtcaagttatatcataaaaatttatataaaactttataaacgtgtaagcttgcgaaaattatacaagt 26708867  T
Q  211 tatatttataattaccctaaaatgttgatttgttt-aaaatatttgtccatttc 263  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||    
T  26708866 tatatttataattgccctaaaatgttgatttttttaaaaatatttatccatttc 26708813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 26978700 - 26978547
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| || ||||||||||| |||    
T  26978700 cagtgacggatccaaaaattttaataagtggggtcaagttatatcataaaaatttatataaaactttataaacgtgtaagcttgcgaaaattatacaagt 26978601  T
Q  211 tatatttataattaccctaaaatgttgatttgttt-aaaatatttgtccatttc 263  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||    
T  26978600 tatatttataattgccctaaaatgttgatttttttaaaaatatttatccatttc 26978547  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 37192853 - 37193006
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||    
T  37192853 cagtgacggatccataaattttaataagtgaggtcaagttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagt 37192952  T
Q  211 tatatttataattaccctaaaatgttgatttgt-ttaaaatatttgtccatttc 263  Q
    |||||||||||||  |||||||||||||||| |   ||||||||||||||||||    
T  37192953 tatatttataattgtcctaaaatgttgatttttaaaaaaatatttgtccatttc 37193006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 29068961 - 29069112
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||||| ||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||    
T  29068961 cagtgacggatccaaaaaatttaataagtggggtcaacttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagt 29069060  T
Q  211 tatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    |||| |||||||| |||||||||  |  ||| || ||||||||||||||||||    
T  29069061 tatacttataattgccctaaaataat-tttttttaaaaatatttgtccatttc 29069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 41250087 - 41250030
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtcaagttatatcataaaaatttata 168  Q
    |||||||| ||||||||||||| | ||||||  | |||||||||||||||||||||||    
T  41250087 cagtgacggatccagaaattttaacaagtggaattaagttatatcataaaaatttata 41250030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 7031194 - 7031258
Alignment:
Q  111 cagtgacgaatccagaaattttgataagt-ggggtcaa-gttatatcataaaaatttatataaaa 173  Q
    |||||||| ||||| |||  ||||||||| |||||||| ||||||||||||||||||||||||||    
T  7031194 cagtgacggatccaaaaaaattgataagtaggggtcaaagttatatcataaaaatttatataaaa 7031258  T

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Target: scaffold0092 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 53330 - 53428
Alignment:
Q  123 cagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataa 221  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||    
T  53330 cagaaattttaataagtgaggtcaagttatatcataaaaatttatataaaactttataaatgcgtaagcgtgcgaaaattatacaagttatatttataa 53428  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 17028552 - 17028414
Alignment:
Q  127 aattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatatttataattac 225  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||  ||||| ||||||||| ||| ||||||||||| | |||||||||||||| |    
T  17028552 aattttaataagtgggatcaaagttatatcataaaaatttatataaaattttataaacgcgtaagtgtgcgaaaattatacaatttatatttataattgc 17028453  T
Q  226 cctaaaatgttgatttgtt-taaaatatttgtccatttc 263  Q
    | |||||||||||||| ||  |||||||||||| |||||    
T  17028452 cataaaatgttgattttttaaaaaatatttgtcaatttc 17028414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 263
Target Start/End: Complemental strand, 9592120 - 9591976
Alignment:
Q  120 atccagaaattttgataagtggggtcaag-ttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagttatattta 218  Q
    ||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||| | ||| ||  |||||||||  ||||||||   |||||||||||    
T  9592120 atccaaaaattttaataagtggggtcaaaattatatcataaaaatttatataaaacttaataaacatgtaagcgtgcaaaaattatgtaagttatattta 9592021  T
Q  219 taattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    ||||| |  ||||||||||| || |||||||||||| ||||||||    
T  9592020 taattgctataaaatgttgagttttttaaaatatttttccatttc 9591976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 22434120 - 22434053
Alignment:
Q  196 gaaaattataccagttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22434120 gaaaactatacaatttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 22434053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 19898514 - 19898427
Alignment:
Q  118 gaatccagaaattttgataagtgggg-tcaagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattat 204  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||| ||||||| |||   |||| || ||||||||||  ||||||||    
T  19898514 gaatccagaaattttaataagtggggttcagattatatcataaaattttatatgaaattatataaacacgtaagcgtgcaaaaattat 19898427  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 33819595 - 33819529
Alignment:
Q  197 aaaattataccagttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    |||||||||  |||||| ||||||||| | |||||||||||||||   |||||||||| ||||||||    
T  33819595 aaaattatatgagttatgtttataattgctctaaaatgttgattttagtaaaatatttttccatttc 33819529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 22434169 - 22434125
Alignment:
Q  134 ataagtggggtcaagttatatcataaaaatttatataaaacatta 178  Q
    |||| |||||||||||| || |||||||||||||||||||| |||    
T  22434169 ataaatggggtcaagttgtaccataaaaatttatataaaacttta 22434125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 263
Target Start/End: Original strand, 23428615 - 23428768
Alignment:
Q  110 ccagtgacgaatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattatacca 208  Q
    ||||||| | ||| || |||||| |||||||||||||| ||||||||||||||||||||||||||   |||| | |||||||| ||  |||||||||  |    
T  23428615 ccagtgatggatcgaggaattttaataagtggggtcaaagttatatcataaaaatttatataaaattatataaatgcgtaagcatgcaaaaattatataa 23428714  T
Q  209 gttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    ||||| ||||||||| |  ||||||||||||||  ||||||||||| ||||||||    
T  23428715 gttatgtttataattgctttaaaatgttgattt-cttaaaatatttttccatttc 23428768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 8544157 - 8544087
Alignment:
Q  121 tccagaaattttgataagtggggtcaagttatatcataaaaatttatataaaacattatacacgcgtaagc 191  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| || |||||||    
T  8544157 tccagaaattttaataagtggggtcaagttatatcataaaaatttatataaaattttataaacacgtaagc 8544087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 42594030 - 42594156
Alignment:
Q  114 tgacgaatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagtta 212  Q
    |||||||| |||||||||| |||||| ||||||| |||||| |||||| |||||||||||||  |||| |||||||| | |  | ||||||||   ||||    
T  42594030 tgacgaattcagaaattttaataagtagggtcaaagttataccataaagatttatataaaactatataaacgcgtaaacat--gtaaattatataggtta 42594127  T
Q  213 tatttataattaccctaaaatgttgattt 241  Q
    | |||||||||   |||||||||||||||    
T  42594128 tgtttataattgttctaaaatgttgattt 42594156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 11082797 - 11082950
Alignment:
Q  111 cagtgacgaatccagaaattttgataagtggggtc-aagttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccag 209  Q
    |||||||| ||||||||||||| ||||||| |||| || |||||||||||||||||||||||||   |||| | || ||||||||  |||||||||        
T  11082797 cagtgacggatccagaaattttaataagtgaggtcgaatttatatcataaaaatttatataaaattatataaatgcataagcgtgcaaaaattatataga 11082896  T
Q  210 ttatatttataattaccctaaaatgttgatttgtttaaaatatttgtccatttc 263  Q
    |||||||||||||| | ||||||| ||||||| ||||| |||||| || |||||    
T  11082897 ttatatttataattgctctaaaatcttgatttttttaagatatttttctatttc 11082950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 291959 - 292084
Alignment:
Q  112 agtgacgaatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaacattatacacgcgtaagcgtgagaaaattataccagt 210  Q
    |||||| |||||| ||||||| ||||||  |||||| |||||||||||||||||||||||||||  |||| | |||||||| ||  |||||||||   ||    
T  291959 agtgacaaatccaaaaattttaataagtaaggtcaaagttatatcataaaaatttatataaaactatataaatgcgtaagcatgcaaaaattatatatgt 292058  T
Q  211 tatatttataattaccctaaaatgtt 236  Q
    ||| ||||||||| | ||||||||||    
T  292059 tatgtttataattgctctaaaatgtt 292084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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