View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1640_low_24 (Length: 250)

Name: NF1640_low_24
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1640_low_24
NF1640_low_24
[»] chr2 (4 HSPs)
chr2 (12-250)||(32644237-32644476)
chr2 (16-94)||(1353109-1353187)
chr2 (26-74)||(32644045-32644093)
chr2 (16-94)||(13140569-13140647)
[»] chr4 (13 HSPs)
chr4 (30-94)||(20268922-20268987)
chr4 (34-94)||(24671980-24672040)
chr4 (30-94)||(37724716-37724780)
chr4 (30-94)||(45170683-45170747)
chr4 (30-81)||(49983863-49983914)
chr4 (43-94)||(52485370-52485421)
chr4 (48-94)||(4416504-4416550)
chr4 (48-94)||(4416816-4416862)
chr4 (48-94)||(4592694-4592740)
chr4 (48-85)||(5688732-5688769)
chr4 (49-94)||(20269204-20269249)
chr4 (33-85)||(12714816-12714868)
chr4 (37-85)||(21376115-21376163)
[»] chr1 (1 HSPs)
chr1 (48-93)||(36783416-36783461)
[»] chr7 (5 HSPs)
chr7 (30-94)||(10017649-10017713)
chr7 (48-94)||(7460599-7460645)
chr7 (58-94)||(10017942-10017978)
chr7 (30-90)||(24188190-24188250)
chr7 (48-100)||(48462131-48462183)
[»] chr3 (2 HSPs)
chr3 (26-81)||(30548019-30548074)
chr3 (48-94)||(51388097-51388143)
[»] chr6 (3 HSPs)
chr6 (48-94)||(6611976-6612022)
chr6 (29-94)||(22793587-22793652)
chr6 (58-94)||(34829904-34829940)
[»] chr5 (2 HSPs)
chr5 (45-94)||(32291130-32291179)
chr5 (54-94)||(32290831-32290871)
[»] scaffold0400 (1 HSPs)
scaffold0400 (58-94)||(9921-9957)
[»] scaffold0365 (1 HSPs)
scaffold0365 (58-94)||(10564-10600)
[»] scaffold0045 (1 HSPs)
scaffold0045 (54-94)||(29638-29678)
[»] chr8 (1 HSPs)
chr8 (121-165)||(30581857-30581901)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 32644476 - 32644237
Alignment:
Q  12 atgaaacttactataacatgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaatataacatcatcannnnnn 111  Q
    |||||||||||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |          
T  32644476 atgaaacttactgtaacatgagtaatattttggactaacttcaaacttttaaaacataagagatcaacttaaaatctaaaatataacatcataatttttt 32644377  T
Q  112 nnn-aatttgtttaaataacaattatgtatcaaaatatagacttagcactccaaatttctcccctccggagccctatattcattaaactctcttctattt 210  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  32644376 ttttaatttgtttaaataacaattatgtatcaaaatatagacttagcactccaaatttctcccctctatagccctatattcattaaactctcttctattt 32644277  T
Q  211 gattttcttcttaatagaaatacacatgagataccaatgt 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32644276 gattttcttcttaatagaaatacacatgagataccaatgt 32644237  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 1353109 - 1353187
Alignment:
Q  16 aacttactataacatgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||||| | ||| ||||||||||||||| || ||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  1353109 aacttattctaagatgagtaacattttggaccaacttgaaacttttaaaacataagagaccaacttaaaacctaaaata 1353187  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 32644093 - 32644045
Alignment:
Q  26 aacatgagtaacattttgaactaacttcaaatttttaaaacataagaga 74  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  32644093 aacatgagtaacattttggactaacttaaaacttttaaaacataagaga 32644045  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 13140569 - 13140647
Alignment:
Q  16 aacttactataacatgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||||| |||||  |||||||| | |||||| ||||| ||| |||||||| ||||  || |||||||||||||||||||    
T  13140569 aacttattataatgtgagtaacgtattgaaccaacttgaaacttttaaaatataaatgaccaacttaaaatctaaaata 13140647  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 20268987 - 20268922
Alignment:
Q  30 tgagtaacattttgaactaacttcaaatttttaaaa-cataagagatcaacttaaaatctaaaata 94  Q
    |||||||| |||||||| ||||| ||| |||||||| |||||| || |||||||||||||||||||    
T  20268987 tgagtaacgttttgaaccaacttgaaacttttaaaaacataagggaccaacttaaaatctaaaata 20268922  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 24672040 - 24671980
Alignment:
Q  34 taacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||||||||  || ||||| ||| |||||||||||||  ||||||||||||||||||||||    
T  24672040 taacatttttgaccaacttgaaacttttaaaacataaatgatcaacttaaaatctaaaata 24671980  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 37724716 - 37724780
Alignment:
Q  30 tgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||||||| ||||| || ||||| ||| ||||||||| |||| ||||||||||||| ||||||||    
T  37724716 tgagtaacgttttggaccaacttgaaacttttaaaacctaagggatcaacttaaaaactaaaata 37724780  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 45170747 - 45170683
Alignment:
Q  30 tgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||||||||||||| || ||||| ||| ||||||||| |||| || |||||||||| ||||||||    
T  45170747 tgagtaacattttggaccaacttgaaacttttaaaacctaagggaccaacttaaaaactaaaata 45170683  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 49983914 - 49983863
Alignment:
Q  30 tgagtaacattttgaactaacttcaaatttttaaaacataagagatcaactt 81  Q
    |||||||| |||||||| ||||| |||||||||||||||||| || ||||||    
T  49983914 tgagtaacgttttgaaccaacttaaaatttttaaaacataagggaccaactt 49983863  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 52485421 - 52485370
Alignment:
Q  43 gaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||| ||||| ||| |||||||||||||| ||||||||||||| ||||||||    
T  52485421 gaaccaacttaaaacttttaaaacataagggatcaacttaaaaactaaaata 52485370  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 4416550 - 4416504
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||| ||| |||||||||||||| ||||||||||||| ||||||||    
T  4416550 aacttgaaacttttaaaacataagggatcaacttaaaaactaaaata 4416504  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 4416816 - 4416862
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||| |||||||||||||||||| || |||||||||| ||||||||    
T  4416816 aacttaaaatttttaaaacataagggaccaacttaaaaactaaaata 4416862  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 4592694 - 4592740
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  4592694 aacttaaaacttttaaaacataagagaccaacttaaaacctaaaata 4592740  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 5688732 - 5688769
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaa 85  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  5688732 aacttaaaatttttaaaacataagagagcaacttaaaa 5688769  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 20269204 - 20269249
Alignment:
Q  49 acttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||| ||||||||||||||||||||| ||||||||||  |||||||    
T  20269204 actttaaatttttaaaacataagagaccaacttaaaacgtaaaata 20269249  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 12714868 - 12714816
Alignment:
Q  33 gtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaa 85  Q
    ||||| |||| ||| ||||| ||| ||||||||||||||||||||| ||||||    
T  12714868 gtaacgttttaaaccaacttaaaacttttaaaacataagagatcaatttaaaa 12714816  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 21376163 - 21376115
Alignment:
Q  37 cattttgaactaacttcaaatttttaaaacataagagatcaacttaaaa 85  Q
    |||||||||| ||||| ||| |||||||| ||||| |||||||||||||    
T  21376163 cattttgaaccaacttgaaacttttaaaatataagggatcaacttaaaa 21376115  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 36783416 - 36783461
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaat 93  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  36783416 aacttgaaatttttaaaacataaaagaccaacttaaaatctaaaat 36783461  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 10017713 - 10017649
Alignment:
Q  30 tgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||||||||||||| |||||||| ||| ||||||||||||||  ||| | |||||| ||||||||    
T  10017713 tgagtaacattttggactaacttaaaacttttaaaacataaggaatcgatttaaaacctaaaata 10017649  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 7460645 - 7460599
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||| |||||||||||||||||| ||||||||| ||| ||||||||    
T  7460645 aacttgaaatttttaaaacataagggatcaacttgaaaactaaaata 7460599  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 10017942 - 10017978
Alignment:
Q  58 ttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  10017942 ttttaaaacataagagaccaacttaaaacctaaaata 10017978  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 24188190 - 24188250
Alignment:
Q  30 tgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaa 90  Q
    ||||||||||||||||| ||||| ||| | |||||||||||| || |||||| ||| ||||    
T  24188190 tgagtaacattttgaaccaacttgaaactcttaaaacataagggaccaacttgaaacctaa 24188250  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 48462131 - 48462183
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaatataacat 100  Q
    ||||| ||| |||||||||||||| || |||||||||| |||||||| |||||    
T  48462131 aacttgaaacttttaaaacataagggaccaacttaaaaactaaaataaaacat 48462183  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 30548019 - 30548074
Alignment:
Q  26 aacatgagtaacattttgaactaacttcaaatttttaaaacataagagatcaactt 81  Q
    |||||||||||| ||||| || ||||| ||| ||||||||| ||||||||||||||    
T  30548019 aacatgagtaacgttttggaccaacttgaaacttttaaaacgtaagagatcaactt 30548074  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 51388097 - 51388143
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  51388097 aacttaaaacttttaaaacataagagaccaacttaaaaactaaaata 51388143  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 6611976 - 6612022
Alignment:
Q  48 aacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||| ||| |||||||||| ||| ||||||||||||||||||||||    
T  6611976 aacttgaaacttttaaaacacaagggatcaacttaaaatctaaaata 6612022  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 22793587 - 22793652
Alignment:
Q  29 atgagtaacattttgaactaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||||||||||||| || ||||| ||| ||||||||| |||| || |||||| ||| ||||||||    
T  22793587 atgagtaacattttggacaaacttgaaacttttaaaacgtaagggaccaacttgaaacctaaaata 22793652  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 34829904 - 34829940
Alignment:
Q  58 ttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  34829904 ttttaaaacataagagaccaacttaaaacctaaaata 34829940  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 32291130 - 32291179
Alignment:
Q  45 actaacttcaaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    |||||||| ||||||||||||||||||  || ||||||||| ||||||||    
T  32291130 actaactttaaatttttaaaacataaggaattaacttaaaacctaaaata 32291179  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 32290871 - 32290831
Alignment:
Q  54 aaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||||||||||| |||| ||||||||||||| ||||||||    
T  32290871 aaatttttaaaacttaagggatcaacttaaaacctaaaata 32290831  T

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Target: scaffold0400 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 9921 - 9957
Alignment:
Q  58 ttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  9921 ttttaaaacataagagaccaacttaaaacctaaaata 9957  T

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Target: scaffold0365 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 10564 - 10600
Alignment:
Q  58 ttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  10564 ttttaaaacataagagaccaacttaaaacctaaaata 10600  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 29678 - 29638
Alignment:
Q  54 aaatttttaaaacataagagatcaacttaaaatctaaaata 94  Q
    ||||||||||||| |||||||||||||| ||| ||||||||    
T  29678 aaatttttaaaacgtaagagatcaacttgaaaactaaaata 29638  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 30581901 - 30581857
Alignment:
Q  121 tttaaataacaattatgtatcaaaatatagacttagcactccaaa 165  Q
    |||||||| ||||||| | |||||||||||||||||| |||||||    
T  30581901 tttaaatatcaattatatttcaaaatatagacttagccctccaaa 30581857  T

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