View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1640_low_25 (Length: 249)

Name: NF1640_low_25
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1640_low_25
NF1640_low_25
[»] chr6 (17 HSPs)
chr6 (31-249)||(25195479-25195697)
chr6 (128-225)||(10564917-10565014)
chr6 (29-102)||(5724743-5724816)
chr6 (33-102)||(4910807-4910876)
chr6 (28-79)||(9922382-9922433)
chr6 (132-203)||(13687591-13687662)
chr6 (29-67)||(765499-765537)
chr6 (33-102)||(6896049-6896118)
chr6 (37-98)||(7952830-7952891)
chr6 (132-173)||(10874325-10874366)
chr6 (31-80)||(33136598-33136647)
chr6 (132-176)||(7486424-7486468)
chr6 (154-210)||(8092007-8092063)
chr6 (34-102)||(10400814-10400882)
chr6 (46-102)||(31710512-31710568)
chr6 (34-98)||(34620789-34620853)
chr6 (34-98)||(34748226-34748290)
[»] chr4 (23 HSPs)
chr4 (29-98)||(46344944-46345013)
chr4 (33-102)||(21691337-21691406)
chr4 (29-102)||(35064962-35065035)
chr4 (45-102)||(50061764-50061821)
chr4 (104-184)||(24921479-24921558)
chr4 (31-102)||(54705506-54705577)
chr4 (29-102)||(2635062-2635135)
chr4 (132-209)||(43628117-43628194)
chr4 (33-102)||(49138952-49139021)
chr4 (132-210)||(4014167-4014245)
chr4 (132-210)||(33560578-33560656)
chr4 (33-102)||(33456273-33456342)
chr4 (132-168)||(11271587-11271623)
chr4 (132-235)||(25319047-25319149)
chr4 (33-85)||(31013850-31013902)
chr4 (133-213)||(35995229-35995308)
chr4 (31-102)||(16551856-16551927)
chr4 (31-62)||(39211087-39211118)
chr4 (139-209)||(22683870-22683940)
chr4 (29-102)||(48045814-48045888)
chr4 (33-102)||(2326928-2326997)
chr4 (29-78)||(26617740-26617789)
chr4 (132-184)||(29904013-29904065)
[»] chr2 (20 HSPs)
chr2 (132-229)||(37561706-37561801)
chr2 (139-213)||(32827519-32827594)
chr2 (31-102)||(33047667-33047738)
chr2 (132-184)||(44810374-44810426)
chr2 (132-182)||(3654930-3654980)
chr2 (31-102)||(9943322-9943393)
chr2 (132-183)||(29823508-29823559)
chr2 (33-79)||(8481391-8481437)
chr2 (39-101)||(30503109-30503171)
chr2 (33-103)||(32595894-32595964)
chr2 (132-182)||(37402269-37402319)
chr2 (132-210)||(44439253-44439331)
chr2 (37-102)||(11759941-11760006)
chr2 (139-184)||(28028848-28028893)
chr2 (132-213)||(33502853-33502934)
chr2 (34-102)||(7629761-7629829)
chr2 (33-77)||(15928551-15928595)
chr2 (132-168)||(43073975-43074011)
chr2 (29-61)||(43501083-43501115)
chr2 (132-168)||(43501125-43501160)
[»] scaffold0168 (1 HSPs)
scaffold0168 (33-102)||(31725-31794)
[»] scaffold0314 (1 HSPs)
scaffold0314 (34-102)||(17325-17393)
[»] chr8 (11 HSPs)
chr8 (45-102)||(44141186-44141243)
chr8 (29-102)||(15677911-15677984)
chr8 (34-102)||(32100972-32101040)
chr8 (133-176)||(39648381-39648424)
chr8 (133-205)||(11791746-11791818)
chr8 (33-81)||(13384771-13384819)
chr8 (34-102)||(39648263-39648331)
chr8 (29-76)||(32994337-32994384)
chr8 (29-78)||(42455835-42455884)
chr8 (132-168)||(1836262-1836298)
chr8 (29-77)||(5859178-5859226)
[»] chr5 (21 HSPs)
chr5 (31-102)||(11647981-11648052)
chr5 (31-102)||(18851197-18851268)
chr5 (132-210)||(42439625-42439703)
chr5 (33-102)||(22226353-22226422)
chr5 (134-210)||(12432961-12433037)
chr5 (29-80)||(25548439-25548490)
chr5 (130-245)||(35439113-35439227)
chr5 (30-100)||(3043118-3043188)
chr5 (49-102)||(38845644-38845697)
chr5 (33-102)||(39097163-39097232)
chr5 (132-184)||(3970434-3970486)
chr5 (34-78)||(12404997-12405041)
chr5 (34-102)||(15368142-15368210)
chr5 (132-183)||(34195211-34195262)
chr5 (32-79)||(35108161-35108208)
chr5 (132-170)||(1102133-1102171)
chr5 (132-210)||(29923241-29923319)
chr5 (132-206)||(42194543-42194617)
chr5 (31-76)||(7637497-7637542)
chr5 (132-184)||(11599632-11599684)
chr5 (132-196)||(17862505-17862569)
[»] chr3 (12 HSPs)
chr3 (31-102)||(1290680-1290751)
chr3 (49-102)||(52363964-52364017)
chr3 (132-184)||(21513380-21513432)
chr3 (31-99)||(52925726-52925794)
chr3 (132-182)||(23290292-23290342)
chr3 (132-182)||(49634075-49634125)
chr3 (34-103)||(3776437-3776506)
chr3 (37-102)||(3845233-3845298)
chr3 (134-207)||(7298328-7298400)
chr3 (33-102)||(52141362-52141431)
chr3 (35-77)||(38332656-38332698)
chr3 (31-80)||(7262819-7262868)
[»] chr7 (10 HSPs)
chr7 (132-210)||(18349774-18349852)
chr7 (132-176)||(36271329-36271373)
chr7 (37-76)||(45997431-45997470)
chr7 (132-210)||(42675058-42675136)
chr7 (40-102)||(46325574-46325636)
chr7 (29-102)||(40491477-40491550)
chr7 (31-76)||(41841088-41841133)
chr7 (34-103)||(45004883-45004952)
chr7 (34-102)||(38123766-38123834)
chr7 (31-79)||(48158813-48158861)
[»] chr1 (17 HSPs)
chr1 (33-102)||(28084005-28084074)
chr1 (29-98)||(45660862-45660930)
chr1 (29-80)||(47892501-47892552)
chr1 (150-245)||(48832907-48833001)
chr1 (127-215)||(32088578-32088664)
chr1 (34-102)||(30557415-30557483)
chr1 (33-93)||(36780234-36780294)
chr1 (135-186)||(5407803-5407854)
chr1 (31-102)||(15478116-15478187)
chr1 (134-176)||(10324766-10324808)
chr1 (127-209)||(39289272-39289354)
chr1 (155-213)||(50845180-50845238)
chr1 (178-247)||(2099659-2099728)
chr1 (34-87)||(30234608-30234661)
chr1 (132-209)||(35592496-35592572)
chr1 (34-102)||(8381883-8381951)
chr1 (34-102)||(35681829-35681897)
[»] scaffold0197 (1 HSPs)
scaffold0197 (43-98)||(31542-31597)
[»] scaffold0024 (1 HSPs)
scaffold0024 (135-210)||(23601-23675)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 25195479 - 25195697
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaattttggtttcaagtttggaggaggcaaa 130  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195479 agcaaccaaacatgtcagaatcaattatacacatccagaatcaattttggttcctctagaagtggaaccaaattttggtttcaagtttggaggaggcaaa 25195578  T
Q  131 tttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatca 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195579 tttgattctaacttgaaactaggatctgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatca 25195678  T
Q  231 aaacacaaaccacttttga 249  Q
    |||||||||||||||||||    
T  25195679 aaacacaaaccacttttga 25195697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 10565014 - 10564917
Alignment:
Q  128 aaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatg 225  Q
    ||||| ||||||||||||||  |||||||||||||||||||||| ||| |||||||| |  ||||| || |||||||||||| ||| |||||| ||||    
T  10565014 aaattcgattctaacttgaagttaggatttgtagcttttgactcaaaatgtgattttaacgctaaagtttattgttcaactccttttttatgtaaatg 10564917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 5724743 - 5724816
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||| ||||||||||||||||||||| ||||| || | ||| ||||||||  ||||||||||||||||||||    
T  5724743 aaagcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaa 5724816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 4910876 - 4910807
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||||||||||| ||||||| || |||||||| | ||  ||||| |||||||||||||    
T  4910876 caaccaaacatgtcagaatcaattctacacattcagaatcaattatagtctctctaaaagtggaaccaaa 4910807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 9922433 - 9922382
Alignment:
Q  28 caaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttg 79  Q
    ||||| |||||||||| ||| ||||||||||||||||| | |||||||||||    
T  9922433 caaagaaaccaaacatatcaaaatcaattatacacatcaagaatcaattttg 9922382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 13687591 - 13687662
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgtt 203  Q
    ||||||||||||||||  ||||| ||||||||| || |||||||  ||||||||| ||| ||||| ||||||    
T  13687591 ttgattctaacttgaagataggacttgtagcttctgtctccaaatatgattttcacactcaaatttattgtt 13687662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 765499 - 765537
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatcca 67  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  765499 aaagcaaccaaacacgtcagaatcaattctacacatcca 765537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 6896049 - 6896118
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||| |||||||| ||||  |||| ||||| |||| ||  || ||||||||||||||||    
T  6896049 caaccaaacatgtcataatcaattctacatctccagaatcattttttgtcactttagaagtggaaccaaa 6896118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 7952830 - 7952891
Alignment:
Q  37 caaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 98  Q
    ||||||||||| |||||||| ||||| |||||||| |||||| |   |||||||||||||||    
T  7952830 caaacatgtcataatcaattttacacctccataattaattttagcctctctagaagtggaac 7952891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 10874366 - 10874325
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactcca 173  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  10874366 ttgattctaacttgaaacaataatttgtagcttttgactcca 10874325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 33136598 - 33136647
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 80  Q
    ||||||||||||||||| |||||||||||||| || | ||| ||||||||    
T  33136598 agcaaccaaacatgtcaaaatcaattatacacctctagaattaattttgg 33136647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 7486424 - 7486468
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaac 176  Q
    |||||| ||||||||||||| ||||||||| ||||| ||||||||    
T  7486424 ttgattttaacttgaaactatgatttgtagtttttgcctccaaac 7486468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 8092063 - 8092007
Alignment:
Q  154 atttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    ||||||| ||||||  || |||||||||||| |||||||| || |||||||||||||    
T  8092063 atttgtaccttttgtgtctaaacgtgatttttatactaaagtttattgttcaactca 8092007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 10400814 - 10400882
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||| ||| |||||||||||||| || | |||||||||||  ||||| |  ||||||||||||    
T  10400814 aaccaaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaa 10400882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 31710512 - 31710568
Alignment:
Q  46 cagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||| |||||||||| |||||||| ||||  ||||| ||| |||||||||    
T  31710512 cagaatcaattctacacatccacaatcaattatggtctctctaaaagaggaaccaaa 31710568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 34620853 - 34620789
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 98  Q
    |||||||||||||| |||||||| ||||| |  | |||||||||||| ||||| | |||||||||    
T  34620853 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaac 34620789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 34748290 - 34748226
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 98  Q
    |||||||||||||| |||||||| ||||| |  | |||||||||||| ||||| | |||||||||    
T  34748290 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaac 34748226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 46344944 - 46345013
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 98  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||    
T  46344944 aaagcaaccaaacatgtcagaattaattatacacctccataatcaattttgggccctctagaagtggaac 46345013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 21691337 - 21691406
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||| ||||||||||||||| ||||| |||| |||||||| |||| ||||||||||||||||||||    
T  21691337 caaccaaatatgtcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaa 21691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 35065035 - 35064962
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||| |||||| |||||||| ||||| ||||||||||||||||   |||| |||||||||||||||    
T  35065035 aaagcaaccaaaaatgtcataatcaattctacacctccataatcaattttgacccctcgagaagtggaaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 50061764 - 50061821
Alignment:
Q  45 tcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||||||||||    
T  50061764 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaa 50061821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 24921558 - 24921479
Alignment:
Q  104 tttggtttcaagtttggaggaggcaaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 184  Q
    ||||||||||| |||| | |||||||| ||||||||||||||||||| | ||||||||||||||||| || || |||||||    
T  24921558 tttggtttcaa-tttgaatgaggcaaaattgattctaacttgaaacttgaatttgtagcttttgacttcatacatgatttt 24921479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 54705506 - 54705577
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||| |||||||||||| || | ||||  |||||||||  ||||||||||||||||||||    
T  54705506 agcaaccaaacatgtctgaatcaattatataccttcatagccaattttggcccctctagaagtggaaccaaa 54705577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 2635135 - 2635062
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||| ||||||||||| |||||||| ||||| || | ||||||||||||| |||||| ||||| |||||||    
T  2635135 aaagcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaa 2635062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 43628117 - 43628194
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 209  Q
    |||||||||| ||||| ||| ||||||||| |||||||||||||| ||||||| | | | ||||| ||||||||||||    
T  43628117 ttgattctaagttgaagctaagatttgtagattttgactccaaacatgattttaacatttaaatttattgttcaactc 43628194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 49138952 - 49139021
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||||||||||| ||||| || | ||||||||||||   || ||||||||||||||||    
T  49138952 caaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaa 49139021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 4014167 - 4014245
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||||||||||||| ||| |||||  | ||||||||||||||||| ||||| | | ||||||| || ||||||||||    
T  4014167 ttgattctaacttgaagctatgatttaaatcttttgactccaaacgtaatttttacagtaaaatttatggttcaactca 4014245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 33560656 - 33560578
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||||||||   || |||||||||||||||||||| || ||| |||||||| | ||| | |||||||||||||||||    
T  33560656 ttgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgatttttaaactgacattcattgttcaactca 33560578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 33456342 - 33456273
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||| ||| |||||| |||||||| ||||||| || |||||||| | || ||||||||||||||||||||    
T  33456342 caacaaaatatgtcataatcaattctacacattcaaaatcaattatagtccctctagaagtggaaccaaa 33456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 11271623 - 11271587
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttga 168  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11271623 ttgattctaacttgaagctaggatttgtagcttttga 11271587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 25319047 - 25319149
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtga-ttttcatactaaaattcattgttcaactcatttcttatgtgaatgtatca 230  Q
    ||||||||||||||||  ||||||||||||| ||||| || ||| |||| |||| ||||| ||||| ||||||||||||| || ||| || ||||||||     
T  25319047 ttgattctaacttgaaggtaggatttgtagc-tttgagtctaaatgtgattttttatactgaaatttattgttcaactcactt-ttacgtaaatgtatcg 25319144  T
Q  231 aaaca 235  Q
    |||||    
T  25319145 aaaca 25319149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 31013850 - 31013902
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcct 85  Q
    ||||||||||||||| |||||||| |||||||| | |||||||| ||||||||    
T  31013850 caaccaaacatgtcaaaatcaattttacacatctaaaatcaattatggttcct 31013902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 35995229 - 35995308
Alignment:
Q  133 tgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcattt 213  Q
    ||||||||||||||| || ||||| |||| ||| |||| ||||| | ||||||| ||| ||||| ||||||||||||||||    
T  35995229 tgattctaacttgaagctcggattggtagttttagacttcaaacttaattttcacactcaaatt-attgttcaactcattt 35995308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 16551927 - 16551856
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||| ||||||||||||||||| ||||| || | ||||||||||| |  ||||  |||||||||||||    
T  16551927 agcaaccatacatgtcagaatcaattctacacctctaaaatcaattttgatctctctgaaagtggaaccaaa 16551856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 39211087 - 39211118
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacac 62  Q
    ||||||||||||||||||||||||||||||||    
T  39211087 agcaaccaaacatgtcagaatcaattatacac 39211118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 22683870 - 22683940
Alignment:
Q  139 taacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 209  Q
    ||||||||| ||| ||| |||||||||||| || |||||||||||| | | | ||||| ||||||||||||    
T  22683870 taacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaactc 22683940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 48045814 - 48045888
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg-ttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||||| ||||||||| |||   || | ||||||||||||   ||||||||||||||||||||    
T  48045814 aaagcaaccaaacatgtccgaatcaattctacttctctagaatcaattttggccccctctagaagtggaaccaaa 48045888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 2326928 - 2326997
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||| |||||||| || || |||||||| |||| |||| || ||| ||||| |||||||    
T  2326928 caaccaaacatgtcataatcaattctatacctccataattaattatggtcccactaaaagtgaaaccaaa 2326997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 26617740 - 26617789
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaatttt 78  Q
    |||||| |||||||||||| |||||||| |||||||| | ||||||||||    
T  26617740 aaagcatccaaacatgtcaaaatcaattttacacatctagaatcaatttt 26617789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 29904013 - 29904065
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 184  Q
    |||||||||||||||| |||   |||||| |||||||||||||| ||||||||    
T  29904013 ttgattctaacttgaagctatattttgtaacttttgactccaaaagtgatttt 29904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 37561706 - 37561801
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatc 229  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| |||||||| | ||| ||||  |||||||||||  ||| |||||||||||||||    
T  37561706 ttgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgatttttacactcaaatctattgttcaact--tttgttatgtgaatgtatc 37561801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 32827519 - 32827594
Alignment:
Q  139 taacttgaaactaggatttgta-gcttttgactccaaacgtgattttcatactaaaattcattgttcaactcattt 213  Q
    ||||||||| ||||||||| || |||||||| ||||||||||||||||||| | ||||  ||||||||||||||||    
T  32827519 taacttgaagctaggatttttaagcttttgattccaaacgtgattttcataatcaaatatattgttcaactcattt 32827594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 33047667 - 33047738
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||| ||||||||| |||||||||| ||||| |||| ||||||||||||| |||||||||| | |||||||    
T  33047667 agcaatcaaacatgtgagaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaa 33047738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 44810374 - 44810426
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 184  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| |||||||    
T  44810374 ttgattctaacttgaagctaggatttgtagcttttgacggcaaacatgatttt 44810426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 3654980 - 3654930
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 182  Q
    ||||||||||||| || |||||||||||| ||||||||||||||| |||||    
T  3654980 ttgattctaacttcaagctaggatttgtaccttttgactccaaacatgatt 3654930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 9943393 - 9943322
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||| | |||||||| ||||| | || |||||||||||||| ||| | | |||||||||||    
T  9943393 agcaaccaaacatgttaaaatcaattttacaccttcagaatcaattttggttgctccaaatgtggaaccaaa 9943322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 29823508 - 29823559
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattt 183  Q
    ||||||| |||||||| ||| ||||||||||||||||| ||||| |||||||    
T  29823508 ttgattcaaacttgaatctaagatttgtagcttttgaccccaaatgtgattt 29823559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 8481391 - 8481437
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttg 79  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||    
T  8481391 caacaaaacatgtcaaaatccattatacacatccagaatcaattttg 8481437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 30503171 - 30503109
Alignment:
Q  39 aacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaa 101  Q
    ||||||| |||||||||| ||||| |||| |||||||||||   ||| |||||||||||||||    
T  30503171 aacatgttagaatcaattctacacttccaaaatcaattttgacccctttagaagtggaaccaa 30503109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 32595964 - 32595894
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 103  Q
    ||||||||||||||||||   ||| |||||  |||||||||||| |||| ||||||||| || ||||||||    
T  32595964 caaccaaacatgtcagaaatgattttacaccaccataatcaattatggtccctctagaattgaaaccaaat 32595894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 37402319 - 37402269
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 182  Q
    |||| ||||||||||| |||| ||||||||||||||||| ||||| |||||    
T  37402319 ttgactctaacttgaagctagaatttgtagcttttgacttcaaacatgatt 37402269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 44439253 - 44439331
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||||||||||||| |||  ||||| ||||||||| || |||  ||||||| | ||| ||||| |||||||||||||    
T  44439253 ttgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactca 44439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 11759941 - 11760006
Alignment:
Q  37 caaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||||||| ||||| |||  ||||||||||| |  |||||||| ||||| ||||    
T  11759941 caaacatgtcagaatcaattctacacttccggaatcaattttgatctctctagaaatggaatcaaa 11760006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 28028848 - 28028893
Alignment:
Q  139 taacttgaaactaggatttgtagcttttgactccaaacgtgatttt 184  Q
    ||||||||| |||| ||||||||||||||||| |||| ||||||||    
T  28028848 taacttgaagctagaatttgtagcttttgactacaaatgtgatttt 28028893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 33502934 - 33502853
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcattt 213  Q
    |||||||||||||||| |||| ||||  || |||||| || | | |||||| | | ||||||||| ||||||||||||||||    
T  33502934 ttgattctaacttgaagctagaatttcaagtttttgagtctagatgtgattattacactaaaatttattgttcaactcattt 33502853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 7629829 - 7629761
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||| || |||||||| ||||| || | ||||||| |||| ||||| | |||||||||||||    
T  7629829 aaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaa 7629761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 15928551 - 15928595
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattt 77  Q
    ||||||||||||||| |||||||| ||||| |||| |||||||||    
T  15928551 caaccaaacatgtcaaaatcaattctacacctccagaatcaattt 15928595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 43073975 - 43074011
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttga 168  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43073975 ttgattttaacttgaaactaagatttgtagcttttga 43074011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 43501115 - 43501083
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattataca 61  Q
    |||||||||||||||||||||||||||| ||||    
T  43501115 aaagcaaccaaacatgtcagaatcaattctaca 43501083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 43501125 - 43501160
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttga 168  Q
    ||||||||| |||||||||||||||||||||||||||    
T  43501125 ttgattcta-cttgaaactaggatttgtagcttttga 43501160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 31794 - 31725
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||||||||||| ||||| || | |||||||||||||  |||||||||||||||||||    
T  31794 caaccaaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaa 31725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 17393 - 17325
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||| |||||| |||||||| ||||| |||| |||||||||||||| |||||||||||||||||||    
T  17393 aaccaaatatgtcataatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaa 17325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 44141186 - 44141243
Alignment:
Q  45 tcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||||||||||    
T  44141186 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaa 44141243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 15677911 - 15677984
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||||||||||||||| ||||  |||| ||||||||||    ||| ||||||||||||||||    
T  15677911 aaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaattttaacccctgtagaagtggaaccaaa 15677984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 32101040 - 32100972
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||||||||||| ||||||| || |||||| | | || |||||| |||||||||||||    
T  32101040 aaccaaacatgtcagaatcaattctacacattcagaatcaactctagtccctctaaaagtggaaccaaa 32100972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 39648424 - 39648381
Alignment:
Q  133 tgattctaacttgaaactaggatttgtagcttttgactccaaac 176  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  39648424 tgattctaactttaagctaggatttgtagcttttgactccaaac 39648381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 11791818 - 11791746
Alignment:
Q  133 tgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttca 205  Q
    |||||||| ||| || |||||||||||||||||||| ||  ||||||||||| | ||||||||| | ||||||    
T  11791818 tgattctaccttcaagctaggatttgtagcttttgagtctcaacgtgatttttacactaaaatttactgttca 11791746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 13384771 - 13384819
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggt 81  Q
    |||||||||||||||||||||||| ||||| |||| |||||||| ||||    
T  13384771 caaccaaacatgtcagaatcaattctacacctccaaaatcaattatggt 13384819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 39648263 - 39648331
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||| |||||||||||||  || | |||||||||||  ||||||| ||||| |||||||    
T  39648263 aaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaa 39648331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 32994337 - 32994384
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaatt 76  Q
    ||||||||||||||| ||| |||||||| |||||||||| ||||||||    
T  32994337 aaagcaaccaaacatatcataatcaattctacacatccagaatcaatt 32994384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 42455884 - 42455835
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaatttt 78  Q
    ||||||||||||||||||| |||||||| |||   |||||||||||||||    
T  42455884 aaagcaaccaaacatgtcaaaatcaattctactgctccataatcaatttt 42455835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 1836298 - 1836262
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttga 168  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  1836298 ttgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 5859178 - 5859226
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattt 77  Q
    |||||||| |||||| |||||||||||| ||||| |||||||| |||||    
T  5859178 aaagcaactaaacatatcagaatcaattttacacctccataattaattt 5859226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 11648052 - 11647981
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||| ||||||||||| ||||||||||||||  ||| |||||||| |||| |||||||||||||| |||||    
T  11648052 agcaatcaaacatgtcaaaatcaattatacaccaccaaaatcaattatggtccctctagaagtggagccaaa 11647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 18851197 - 18851268
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||| |||||| |||||| ||||  |||||||||||||||||| |||||||||| |||| ||||    
T  18851197 agcaaccaaacacgtcagagtcaattctacaactccataatcaattttggtccctctagaagcggaatcaaa 18851268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 42439703 - 42439625
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||||||||||||| |||| || |||||||||||| || |||||||||||| | |||||| || || ||||||||||    
T  42439703 ttgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaactca 42439625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 22226353 - 22226422
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||||||||||||| ||||| |||| |||||||| | |||| |||| |||||||| ||||    
T  22226353 caaccaaacatgtcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaa 22226422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 12433037 - 12432961
Alignment:
Q  134 gattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||||||||||| |||||||||||| || ||||||| |||||||||||  | ||  ||||| |||||||||||||    
T  12433037 gattctaacttgaagctaggatttgtatctgttgactcaaaacgtgatttctacacacaaatttattgttcaactca 12432961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 25548490 - 25548439
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 80  Q
    ||||||| ||||||||||| |||||||| |||||||||| ||||||||||||    
T  25548490 aaagcaatcaaacatgtcataatcaattctacacatccacaatcaattttgg 25548439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 35439113 - 35439227
Alignment:
Q  130 atttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatc 229  Q
    |||| ||||||| ||||| |||| |||||||  ||||||||||||| || || || ||||| | ||| |||||||||||||||| ||| || ||||||||    
T  35439113 atttcattctaaattgaagctagaatttgtactttttgactccaaatgtaatcttaatactcacatttattgttcaactcattt-ttacgttaatgtatc 35439211  T
Q  230 aaaacacaaaccactt 245  Q
     ||||| |||| ||||    
T  35439212 caaacataaacaactt 35439227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 3043118 - 3043188
Alignment:
Q  30 aagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaacca 100  Q
    ||||||| |||||||||| |||||||| ||||| || | ||||||||||| |||||| | |||||||||||    
T  3043118 aagcaactaaacatgtcaaaatcaattctacacctctagaatcaattttgattcctccataagtggaacca 3043188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 38845644 - 38845697
Alignment:
Q  49 aatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||| ||||| |||| |||||||||||||  |||||||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaa 38845697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 39097232 - 39097163
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||| |||||||| ||||| || ||||||||||| |||  ||||| ||||| |||||||    
T  39097232 caaccaaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaa 39097163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 3970486 - 3970434
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 184  Q
    ||||||||||  |||| |||||| ||||||||||||||||||||| |||||||    
T  3970486 ttgattctaatctgaagctaggaattgtagcttttgactccaaacttgatttt 3970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 12404997 - 12405041
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaatttt 78  Q
    |||||||||||||| |||||||||||||| | |||||||||||||    
T  12404997 aaccaaacatgtcaaaatcaattatacaccttcataatcaatttt 12405041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 15368210 - 15368142
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||| |||||||| |||||||| |||| ||| | |||||||||||| ||||| | |||||||||||||    
T  15368210 aaccatacatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaa 15368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 34195211 - 34195262
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattt 183  Q
    |||||| |||||| || |||||||||||| ||||| ||||||||||||||||    
T  34195211 ttgattttaactttaagctaggatttgtatcttttaactccaaacgtgattt 34195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 35108208 - 35108161
Alignment:
Q  32 gcaaccaaacatgtcagaatcaattatacacatccataatcaattttg 79  Q
    |||| |||| ||||||||||||||||||||| |||| |||||||||||    
T  35108208 gcaatcaaatatgtcagaatcaattatacacttccaaaatcaattttg 35108161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 1102133 - 1102171
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgact 170  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  1102133 ttgattttaacttgaagctaggatttgtagcttttgact 1102171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 29923241 - 29923319
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||||||||||||| ||| ||||||| | |||| |||| |||||||||||| | ||| ||||| | |||| ||||||    
T  29923241 ttgattctaacttgaagctaagatttgtcgtttttaactcaaaacgtgatttttacactcaaatttaatgtttaactca 29923319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 42194617 - 42194543
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaa 206  Q
    ||||||||||| |||| ||||| |||||||||||||| || ||| ||| |||| | ||| ||||| |||||||||    
T  42194617 ttgattctaacctgaagctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 42194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 7637497 - 7637542
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaatt 76  Q
    ||||| ||||||||||| |||||||| |||||||||| ||||||||    
T  7637497 agcaatcaaacatgtcaaaatcaattttacacatccagaatcaatt 7637542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 11599632 - 11599684
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 184  Q
    ||||||||||||||||| ||| | ||||| ||||| ||||||||| |||||||    
T  11599632 ttgattctaacttgaaattagaacttgtaacttttaactccaaacatgatttt 11599684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 17862505 - 17862569
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaatt 196  Q
    |||||| ||||||||| |||  || |||||||||||| | ||||||||||||||| ||| |||||    
T  17862505 ttgattttaacttgaagctataatatgtagcttttgaattcaaacgtgattttcacactcaaatt 17862569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 1290751 - 1290680
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||  ||| |||||||| ||||| || | |||||||||| |||||||||||||||||||||||    
T  1290751 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaa 1290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 52364017 - 52363964
Alignment:
Q  49 aatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||| || ||||||||||||||| |||||| |||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaa 52363964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 21513432 - 21513380
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 184  Q
    |||||| ||||||  | ||||||||||||||||||||||||||||||||||||    
T  21513432 ttgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttt 21513380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 52925726 - 52925794
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaacc 99  Q
    ||||||||||||||||| |||||||||||||| || | |||||||||||  ||||| | ||||||||||    
T  52925726 agcaaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaacc 52925794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 23290292 - 23290342
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 182  Q
    |||||||||||||||||||| ||||||||||||||| | |||||| |||||    
T  23290292 ttgattctaacttgaaactatgatttgtagcttttgcccccaaacatgatt 23290342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 49634125 - 49634075
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 182  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||| ||||||    
T  49634125 ttgattctaacttgaagctaggatttgtagcttttgcctctaaatgtgatt 49634075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 3776506 - 3776437
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 103  Q
    |||||||||||||| |||||||| ||||| || |||| ||||||||  ||||| | ||||||||||||||    
T  3776506 aaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaat 3776437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 3845233 - 3845298
Alignment:
Q  37 caaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||| |||||||| ||||| || | |||||||||||||| ||| | |||||||||||||    
T  3845233 caaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaa 3845298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 7298400 - 7298328
Alignment:
Q  134 gattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaac 207  Q
    |||||||||||||| ||||||||||||| |||||| || || ||||||||| | ||| ||||| ||||||||||    
T  7298400 gattctaacttgaagctaggatttgtagtttttgagtctaatcgtgattttta-actgaaatttattgttcaac 7298328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 52141362 - 52141431
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||| |||||| |||||||| ||| ||||| || | |||||||| |||| ||||||||||||||||||||    
T  52141362 caactaaacatatcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaa 52141431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 38332656 - 38332698
Alignment:
Q  35 accaaacatgtcagaatcaattatacacatccataatcaattt 77  Q
    ||||||||||||| ||||||||||||||||| | |||||||||    
T  38332656 accaaacatgtcaaaatcaattatacacatctagaatcaattt 38332698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 7262868 - 7262819
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 80  Q
    |||||||||||||||||||||||||| | ||| || | ||||||||||||    
T  7262868 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg 7262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 18349774 - 18349852
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||| ||| |||||  |||| |||||||||||||||| ||||||||||||| | ||| ||||| |||||||||||||    
T  18349774 ttgattttaatttgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttattgttcaactca 18349852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 36271373 - 36271329
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaac 176  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||    
T  36271373 ttgattctaatttgaaactaggatttctagcttttgactacaaac 36271329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 45997470 - 45997431
Alignment:
Q  37 caaacatgtcagaatcaattatacacatccataatcaatt 76  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  45997470 caaacatgtaagaatcaattatgcacatccataatcaatt 45997431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 42675136 - 42675058
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    |||||||||||||| |||||||||| |||| |||||| ||||||| | ||||| | | || |||| || ||||||||||    
T  42675136 ttgattctaacttggaactaggattggtagattttgattccaaacataatttttacattagaatttatcgttcaactca 42675058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 46325636 - 46325574
Alignment:
Q  40 acatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||| ||| |||||||| |||||||||| ||| || ||||||| ||||||||||| |||||||    
T  46325636 acatatcaaaatcaattctacacatccaaaattaaatttggtttctctagaagtgaaaccaaa 46325574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 40491550 - 40491477
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||| ||||| |||||||||| ||||   ||||| |||||| ||   ||||||||||||||||||||    
T  40491550 aaagcaaccaaccatgttagaatcaattctacaaccccatattcaattatgacacctctagaagtggaaccaaa 40491477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 41841133 - 41841088
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaatt 76  Q
    ||||||||||||||||| | |||||| ||||| |||||||||||||    
T  41841133 agcaaccaaacatgtcaaagtcaattttacacctccataatcaatt 41841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 45004952 - 45004883
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 103  Q
    |||||||||||||| |||||||| ||||| || | ||||||||||||  | | |||||||| ||||||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaat 45004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 38123766 - 38123834
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||| | |||||||| ||||  || | |||||||||||| ||||| | |||||||||||||    
T  38123766 aaccaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaa 38123834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 48158861 - 48158813
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttg 79  Q
    ||||||||||||||||| |||||||| ||| | | ||||||||||||||    
T  48158861 agcaaccaaacatgtcaaaatcaattttacgccttcataatcaattttg 48158813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 28084005 - 28084074
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||| ||||||||||||||| |||||  ||| | |||||||||| |||||||||||||||| ||||    
T  28084005 caaccaaatatgtcagaatcaattctacactaccagagtcaattttggctcctctagaagtggaatcaaa 28084074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 45660862 - 45660930
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 98  Q
    |||||||||||||||||||||||||||| | ||| |||| ||||||||||||  |||| |||||||||||    
T  45660862 aaagcaaccaaacatgtcagaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaac 45660930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 47892501 - 47892552
Alignment:
Q  29 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 80  Q
    |||||||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  47892501 aaagcaaccaaacatgacggaatcaattctacacttccataatcaattttgg 47892552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 48832907 - 48833001
Alignment:
Q  150 taggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatcaaaacacaaaccactt 245  Q
    |||||||||||||||||||||||||| |||||||| | ||| ||||| ||| || ||||||  | |||||||||| ||||  |||| |||||||||    
T  48832907 taggatttgtagcttttgactccaaatgtgatttttacactcaaatttattattgaactcacgt-ttatgtgaatatatccgaacataaaccactt 48833001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 32088664 - 32088578
Alignment:
Q  127 caaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttct 215  Q
    |||| |||||||||||||||| |||||||||  ||||||||| |  ||| |||||||| | ||| ||||| ||||||||||||| ||||    
T  32088664 caaaattgattctaacttgaagctaggatttcgagcttttgatt--aaaagtgatttttacactgaaatttattgttcaactcacttct 32088578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 30557483 - 30557415
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||||||||||| ||||| |||| |||||||| | || | | ||||||||| ||||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaatcaattctagtccttgtagaagtgggaccaaa 30557415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 36780234 - 36780294
Alignment:
Q  33 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagt 93  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||| |||| |||||| ||||    
T  36780234 caaccaaacatatcaaaatcaattctacacctccataatcaattatggtccctctaaaagt 36780294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 5407803 - 5407854
Alignment:
Q  135 attctaacttgaaactaggatttgtagcttttgactccaaacgtgattttca 186  Q
    ||||||||||||| ||||||||||||||||  ||||| |||| |||||||||    
T  5407803 attctaacttgaagctaggatttgtagcttcggactcaaaacatgattttca 5407854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 15478116 - 15478187
Alignment:
Q  31 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||||| |||||||| |||||  | | |||||| ||||| ||||| | |||||||||||||    
T  15478116 agcaaccaaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaa 15478187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 10324766 - 10324808
Alignment:
Q  134 gattctaacttgaaactaggatttgtagcttttgactccaaac 176  Q
    |||||||||||||| ||||| |||| |||||||||||||||||    
T  10324766 gattctaacttgaagctaggctttgcagcttttgactccaaac 10324808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 39289354 - 39289272
Alignment:
Q  127 caaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 209  Q
    |||| |||||||||||||||| |||| | || |||||||||| || |||||||||||| | ||| ||| | || |||||||||    
T  39289354 caaaattgattctaacttgaagctagaacttttagcttttgagtcaaaacgtgatttttacactgaaacttatcgttcaactc 39289272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 50845180 - 50845238
Alignment:
Q  155 tttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcattt 213  Q
    ||||||| ||||| ||||||| || ||||| ||||| ||||| ||||||||||||||||    
T  50845180 tttgtagtttttgcctccaaatgtaatttttatacttaaatttattgttcaactcattt 50845238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 2099728 - 2099659
Alignment:
Q  178 tgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatcaaaacacaaaccactttt 247  Q
    ||||||||| ||  ||||| || | ||||||||||| |||| |||||||||| ||||||||| |||||||    
T  2099728 tgattttcacacataaatttatagctcaactcattttttatatgaatgtatccaaacacaaatcactttt 2099659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 30234608 - 30234661
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctct 87  Q
    ||||| |||||||| |||||||||||||| |  | |||||||||||||||||||    
T  30234608 aaccatacatgtcataatcaattatacacttatagaatcaattttggttcctct 30234661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 35592496 - 35592572
Alignment:
Q  132 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 209  Q
    ||||||||||||| || ||||||||| ||||||||||||| |||| | ||||| | ||| ||||| ||| ||||||||    
T  35592496 ttgattctaacttaaagctaggatttttagcttttgactctaaacat-atttttacacttaaatttattcttcaactc 35592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 8381951 - 8381883
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    |||||||||||||| |||||||| || || || | |||||||||||  ||||| |||||| ||||||||    
T  8381951 aaccaaacatgtcaaaatcaattttatacctctagaatcaattttgactcctccagaagtcgaaccaaa 8381883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 35681897 - 35681829
Alignment:
Q  34 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 102  Q
    ||||||||||||||||||||||  |||||||| | |||||| ||||   |||||| ||||| |||||||    
T  35681897 aaccaaacatgtcagaatcaatgttacacatctaaaatcaactttgacccctctaaaagtgaaaccaaa 35681829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 31542 - 31597
Alignment:
Q  43 tgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 98  Q
    |||||||||||||| ||||  || | ||||||||||||| ||||||||||||||||    
T  31542 tgtcagaatcaattttacaggtctaaaatcaattttggtccctctagaagtggaac 31597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 23675 - 23601
Alignment:
Q  135 attctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 210  Q
    ||||||||| ||| |||||||||||||||||||| || | |||||||||| | ||||||||| ||  |||||||||    
T  23675 attctaact-gaagctaggatttgtagcttttgaatctagacgtgatttttagactaaaatttatcattcaactca 23601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University