View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_low_28 (Length: 240)
Name: NF1640_low_28
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 18164220 - 18164351
Alignment:
| Q |
1 |
tcttatcccaaccaactttatcaacaaattcatcacttgctatactataacatccaccatttatagctgatgatccaccaagaactcttcctctcacatt |
100 |
Q |
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| T |
18164220 |
tcttatcccaaccaactttatcaacaaattcatcacttgctctactataaaatccaccatttatagctgatgagccaccaagaactcttcctctcacatt |
18164319 |
T |
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| Q |
101 |
gctaaccccttctgcggaagtgaatctttgtg |
132 |
Q |
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| T |
18164320 |
gctaacaccttcttctgaagtgaatctttgtg |
18164351 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 18157803 - 18157711
Alignment:
| Q |
131 |
tgatcaacaggcatgtgatacctacaaataggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaa |
223 |
Q |
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| T |
18157803 |
tgatcaacaggcatctgatacctacaaacaggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaa |
18157711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 18161524 - 18161425
Alignment:
| Q |
124 |
atctttgtgatcaacaggcatgtgatacctacaaataggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaa |
223 |
Q |
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| T |
18161524 |
atctttctcatcaacaggcatgtgatacctacaaacaggacaagacccatgaatccccaaccacttctcaatacactttccatgaaacctatgcttacaa |
18161425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 52896857 - 52896758
Alignment:
| Q |
124 |
atctttgtgatcaacaggcatgtgatacctacaaataggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaa |
223 |
Q |
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| T |
52896857 |
atctttctcatcaacatgtatctgatacctacaaacaaaacaagacctatgaatccccaaccacttctcaatacacttcccatgaaacctatgcttacaa |
52896758 |
T |
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