View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_low_31 (Length: 231)
Name: NF1640_low_31
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 44 - 215
Target Start/End: Original strand, 42236141 - 42236312
Alignment:
| Q |
44 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
143 |
Q |
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| T |
42236141 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
42236240 |
T |
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| Q |
144 |
caacctcaactccatcatcctcatcacaagacccaaataggacaccaaacactacacatgtcacctccattg |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236241 |
caacctcaactccatcatcatcatcacaagacccaaataggacaccaaacactacacatgtcacctccattg |
42236312 |
T |
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