View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1640_low_33 (Length: 224)
Name: NF1640_low_33
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 22016127 - 22015937
Alignment:
| Q |
20 |
tgttcaaacataaaagcttagaagactatgtagcaccgacactttagattgaaggtgtgtccatgtctgcatccgtgcttcatagatagaagatcattta |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22016127 |
tgttcaaacataaaagcttaaaagactatgtagcaccgacactttagattgaaggtgtgtccatgtctgcatccgtgcttcatagatagaagatcattta |
22016028 |
T |
|
| Q |
120 |
gatatttatcagatagtgtattttcagaactttttctattgaaagacattaaataaatgattgattacatattttggcttgtcagtataat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22016027 |
gatatttatcagatagtgtattttcagaactttttctattgaaagacattaaataaatgattgattacatattttggcttgtcagtataat |
22015937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 30871763 - 30871799
Alignment:
| Q |
46 |
tatgtagcaccgacactttagattgaaggtgtgtcca |
82 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
30871763 |
tatgtagcaccaacactttagattgatggtgtgtcca |
30871799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 34489330 - 34489298
Alignment:
| Q |
48 |
tgtagcaccgacactttagattgaaggtgtgtc |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34489330 |
tgtagcaccgacactttagattgaaggtgtgtc |
34489298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 47126374 - 47126339
Alignment:
| Q |
44 |
actatgtagcaccgacactttagattgaaggtgtgt |
79 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47126374 |
actatgtatcaccgacactttagattgaaggtgtgt |
47126339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 5243336 - 5243300
Alignment:
| Q |
45 |
ctatgtagcaccgacactttagattgaaggtgtgtcc |
81 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5243336 |
ctatgtagcaccgacacttctgattgaaggtgtgtcc |
5243300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 2002150 - 2002187
Alignment:
| Q |
45 |
ctatgtagcaccgacactttagattgaaggtgtgtcca |
82 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2002150 |
ctatgtagcaccgacacattagattgaaggtttgtcca |
2002187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 4323827 - 4323859
Alignment:
| Q |
48 |
tgtagcaccgacactttagattgaaggtgtgtc |
80 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
4323827 |
tgtagcactgacactttagattgaaggtgtgtc |
4323859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 35053681 - 35053718
Alignment:
| Q |
43 |
gactatgtagcaccgacactttagattgaaggtgtgtc |
80 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35053681 |
gactatgtagcaccgacacttctgattgaaggtgtgtc |
35053718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 25204150 - 25204183
Alignment:
| Q |
44 |
actatgtagcaccgacactttagattgaaggtgt |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
25204150 |
actatgtagcaccgacactttagattgaatgtgt |
25204183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 26643224 - 26643260
Alignment:
| Q |
45 |
ctatgtagcaccgacactttagattgaaggtgtgtcc |
81 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
26643224 |
ctatgtagcaccgacacttcagattgaaggtttgtcc |
26643260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University