View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_low_9 (Length: 333)
Name: NF1640_low_9
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 129 - 326
Target Start/End: Complemental strand, 13116478 - 13116281
Alignment:
| Q |
129 |
tgacataacataacatcagttagaggtttaattgattaaattcattattcacaaaataataaatgtcttatagagcaattatatttgtttacctttatta |
228 |
Q |
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| T |
13116478 |
tgacataacataacatcagttagaggtttaattgattaaattcattattcacaaaataataaatgtcttatagagcaattatatttgtttatctttatta |
13116379 |
T |
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| Q |
229 |
catctctttaatccttcattttttctctatctctcttgtcttaacacatcaattataattacacgtcaaataatctatcattttactctcttcatttc |
326 |
Q |
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| T |
13116378 |
catctctttaatccttcattttttctctatctctcttatcttaacacatcaattataattacacgtcaaataatctatcattttactctctttatttc |
13116281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 13116647 - 13116550
Alignment:
| Q |
21 |
gtaggagatgttgcacccatctatatatagaatat--gtatatgacttgcttaaggaataatatgtaggaccctgttaacttgaagagtaagctaagt |
116 |
Q |
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| T |
13116647 |
gtaggagatgttgcacccatctatatatagaatatatgtatatgacttgcttaaggaataatatgtaggaccctgttaacttgaagagtaagctaagt |
13116550 |
T |
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