View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1641-INSERTION-10 (Length: 558)
Name: NF1641-INSERTION-10
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641-INSERTION-10 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 360 - 558
Target Start/End: Complemental strand, 49819781 - 49819584
Alignment:
| Q |
360 |
acactacttgatcaatggaaatggtgtgcttcgaatcatctttatggtatcaaccnnnnnnnnctctaaagcctacaccaaatccaccatggttgatcaa |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49819781 |
acactacttgatcaatggaaatggtgtgcttcgaatcatctttatggtatcaaccttttttttctctaaagcctacaccaa-tccaccatggttgatcaa |
49819683 |
T |
|
| Q |
460 |
accacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaactacctatcaatcttaactctatcaactat |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49819682 |
accacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaactacctatcaatcttaactctatcaactat |
49819584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 49820164 - 49819993
Alignment:
| Q |
8 |
ctaacatcaagagaacttatttgaaggtgaagattatttttcaacttcatatgcatactagtcatgtcatctaggagtccaccaccccctggaccactac |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49820164 |
ctaacatcaagagaacttatttgcaggtgaagattatttttcaacttcatatgcatactagtcatgtcatctaggagtccaccaccccctggaccactac |
49820065 |
T |
|
| Q |
108 |
aagttaactaaactatgatggtgttttggtgcaacaatcaggcatatagcatcttgtggaggcgtgcttcgt |
179 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49820064 |
aagttaactaaactatgatggtgttgtggtgcaacaatcaggcatatagcatcttgtggaggcgtgcttcgt |
49819993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 49819908 - 49819843
Alignment:
| Q |
230 |
tgtctgtctgatcatattcagttgcataccattcacattcaatatttcatttgtaaaatactcttt |
295 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49819908 |
tgtctgtctgatcatactcagttgcagaccattcacattcaatatttcatttgtaaaatactcttt |
49819843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 49819974 - 49819934
Alignment:
| Q |
187 |
ttaatcttcctcccgtctaaaggagcaatttactactccata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49819974 |
ttaatcttcctcccgtctaaaggagcaa-ttactactccata |
49819934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University