View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641-INSERTION-11 (Length: 567)
Name: NF1641-INSERTION-11
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641-INSERTION-11 |
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| [»] chr3 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Original strand, 8177707 - 8178266
Alignment:
| Q |
8 |
gatgctgttgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggtatagattaataaatt |
107 |
Q |
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| T |
8177707 |
gatgctgttgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggtatagattaataaatt |
8177806 |
T |
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| Q |
108 |
aaatatcgtccttttttcttagtttacgatgattttcgttttctatgttgagtcttgtttagcaccgatacttcacattgaaggcgtatttggtgtctga |
207 |
Q |
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| T |
8177807 |
aaatatcgtccttttttcttagtttacgatgattttcgttttctatgttgagtcttgtttagcactgatatttcacattgaaggcgtatttggtgtctga |
8177906 |
T |
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| Q |
208 |
catgttttggtattggacactgacacatgtgataacattcaatttattaccaatgtcactgtcgttgtctgaatgaatcatacaaagttcagcatagttt |
307 |
Q |
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| T |
8177907 |
catgttttggtattggacactgacacatgtgataacattcaatttattaccgatgtcactgtcgttgtctgaatgaatcatacaaagttcagcatagttt |
8178006 |
T |
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| Q |
308 |
agcttatcgatgtttatgtttttcattgctttgctttggttgcagtgaatttggtgacatatttgatctagaacacttcaaaagagtccttgcaaacgat |
407 |
Q |
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| T |
8178007 |
agcttattgatatttatgtttttcattgctttgctttggttgcagtgaatttggtgacatatttgatctagaacacttcaaaagagtccttgcaaatgat |
8178106 |
T |
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| Q |
408 |
gtgagagtagtttcagcattgccatcaacacacataatgacaagggcagtggaaggaaggcctccacttcatgccactccgagttggatccgtgcaagat |
507 |
Q |
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| T |
8178107 |
gtgagagtggtttcagcattgccatcaacacacataatgacaaggccagtagaaggaagacctccacttcatgccactccgagttggatccgtgcaagat |
8178206 |
T |
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| Q |
508 |
atctcagaagagtaagaatagttcactgctttttggtttgtttacttgttcatgtgtgaa |
567 |
Q |
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| T |
8178207 |
atctcagaagagtaagaatagttcactgctttttggtttgtttacttgttcatgtgtgaa |
8178266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 42936758 - 42936835
Alignment:
| Q |
16 |
tgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
93 |
Q |
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| T |
42936758 |
tgttattgctaggattcttggtgctgctttggttgttcctattttgcaagttcatgtcatttggggagatgaaaggta |
42936835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 33700848 - 33700925
Alignment:
| Q |
16 |
tgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
93 |
Q |
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| T |
33700848 |
tgttattgctaggattcttggtgctgctttggttgtttctattttgcaagttaatgtcatttgcggagatgaaaggta |
33700925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 33701413 - 33701336
Alignment:
| Q |
16 |
tgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
93 |
Q |
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| T |
33701413 |
tgttattcctaggattcttggtgcatctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggta |
33701336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 469 - 567
Target Start/End: Original strand, 39830182 - 39830280
Alignment:
| Q |
469 |
ctccacttcatgccactccgagttggatccgtgcaagatatctcagaagagtaagaatagttcactgctttttggtttgtttacttgttcatgtgtgaa |
567 |
Q |
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| T |
39830182 |
ctccacttcatgccactcccagttggatccgtgcaagatatctcagaagagtaagaatagttcactgttttttggtttgtttacttgttcctgtgtgaa |
39830280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 7747599 - 7747684
Alignment:
| Q |
8 |
gatgctgttgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
93 |
Q |
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| T |
7747599 |
gatgctgttgttattgctaggattcttggtgctgctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggta |
7747684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 347 - 524
Target Start/End: Original strand, 7748097 - 7748274
Alignment:
| Q |
347 |
ttgcagtgaatttggtgacatatttgatctagaacacttcaaaagagtccttgcaaacgatgtgagagtagtttcagcattgccatcaacacacataatg |
446 |
Q |
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| T |
7748097 |
ttgcagtgaatttgctgatatatttgattttgagcacttcaagaatgttcttgccaatgatgtgcgggtggtttcgtcattgccatcaacacacttgatg |
7748196 |
T |
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| Q |
447 |
acaagggcagtggaaggaaggcctccacttcatgccactccgagttggatccgtgcaagatatctcagaagagtaaga |
524 |
Q |
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| T |
7748197 |
acaaagccagtggagggaagccctccccttcatgtcactccaagttggatccgttcgcgctatctcaaaagagtaaga |
7748274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 9025683 - 9025613
Alignment:
| Q |
185 |
ttgaaggcgtatttggtgtctgacatgttttggtattggacactgacacatgtgataacattcaatttatt |
255 |
Q |
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| T |
9025683 |
ttgaaggtgtgtttggtgtctgacacgttttggtgttggacactgatacatgtgattacagtcaaattatt |
9025613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 28346206 - 28346255
Alignment:
| Q |
16 |
tgttattgctaggattcttg--gtgctgctttggttgttcctgttttgca |
63 |
Q |
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| T |
28346206 |
tgttattgctaggattcttggtgtgatgctttggttgttcctattttgca |
28346255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 28346452 - 28346423
Alignment:
| Q |
16 |
tgttattgctaggattcttggtgctgcttt |
45 |
Q |
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| T |
28346452 |
tgttattgctaggattcttggtgctgcttt |
28346423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 29931717 - 29931765
Alignment:
| Q |
200 |
gtgtctgacatgttttggtattggacactgacacatgtgataacattca |
248 |
Q |
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| T |
29931717 |
gtgtctgacatgtgtcggtgttagacactgacacatgtgattacattca |
29931765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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