View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641-INSERTION-12 (Length: 406)
Name: NF1641-INSERTION-12
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641-INSERTION-12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 7414608 - 7414998
Alignment:
| Q |
8 |
agaaatatgtatatggtttagactttagaaaccttttaacaattatgtaaaagaaaattcattccagtttaacttgcaataattgtctaatagtgttttt |
107 |
Q |
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| T |
7414608 |
agaaatatgtatttggtttagactttagaaaccttttaacaattatgtaaaagaaaattcgatccagtttaacttgcaataattgtctaatagtatattt |
7414707 |
T |
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| Q |
108 |
ggttggacgttacaattcaaaatctcgcattccaaggcagagaaaacgtaaaaatatagaagcttaaatttgtaaaattgactaaaatgcaggttggtgg |
207 |
Q |
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| T |
7414708 |
ggttggacgttacaattcaaaatctcacgtacaaag------aaaacgtaaaatgatagaagcttaaatttatagaattgattaaaatgcagactggtgg |
7414801 |
T |
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| Q |
208 |
gtatctcaccgtgtaaacaaacacagattaataaacgtaaaaagcaagtaagaacatactaacataatttaatttggtatttcaaaactctacaataact |
307 |
Q |
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| T |
7414802 |
gtatcccaccgtgtaaaca--cacagagtaagaaacataaaaagcaagtaagaacatactaacataatttaatttggtattacaaaactctacaataact |
7414899 |
T |
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| Q |
308 |
agtagagagaattaacaaagggatatactactacactcattactaaatgtaaattccaacaatccaacatcatatacttcttcattatcatgtctacat |
406 |
Q |
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| T |
7414900 |
agtagagagaattaacaaagggatatactactacactcattactaaatgtaaattccaacaatccaacatcatatatttcttcattatcatgcctacat |
7414998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 33680268 - 33680403
Alignment:
| Q |
97 |
atagtgtttttggttggacgttacaattcaaaatctcgcattccaaggcagagaaaacgtaaaaatatagaagcttaaatttgtaaaattgactaaaatg |
196 |
Q |
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| T |
33680268 |
atagtgtgtttggtaacacgttccaactcaaaattacgcgtcccaaggcaaagaaaacgtaaaaataaggaagctaagatttgtagagttggtcaaaacg |
33680367 |
T |
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| Q |
197 |
caggttggtgggtatctcaccgtgtaaacaaacaca |
232 |
Q |
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| T |
33680368 |
caggtttgtgggtatcccaccgtgtaaacaaacaca |
33680403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 33396615 - 33396551
Alignment:
| Q |
99 |
agtgtttttggttggacgttacaattcaaaatctcgcattccaaggcagagaaaacgtaaaaata |
163 |
Q |
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| T |
33396615 |
agtgtgtttggttggacgttataattcaaaatcttgcctcccaaggctgagaaaacatgaaaata |
33396551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 42476931 - 42477061
Alignment:
| Q |
99 |
agtgtttttggttggacgttacaattcaaaatctcgcattccaaggcagagaaaacgtaaaaatatagaagcttaaatttgtaaaattgactaaaatgca |
198 |
Q |
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| T |
42476931 |
agtgtgtttggtaggacgatgcaattcaaaatctcgtgtcctaagattgagaaaacgtgaaaataacgaagtttggatttgtagagttggctaaaacgca |
42477030 |
T |
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| Q |
199 |
ggttggtgggtatctcaccgtgtaaacaaac |
229 |
Q |
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| T |
42477031 |
ggttggtgggtatcccactgtgcaaacaaac |
42477061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 41189101 - 41188989
Alignment:
| Q |
116 |
gttacaattcaaaatctcgcattccaaggcagagaaaacgtaaaaatatagaagcttaaatttgtaaaattgactaaaatgcaggttggtgggtatctca |
215 |
Q |
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| T |
41189101 |
gttactatacaaaatctcgtgtcccaaggctcataaaacgtgaaaataacgaagctcaaatttgtagaattggccaaacgcaaggttgctgggtatccca |
41189002 |
T |
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| Q |
216 |
ccgtgtaaacaaa |
228 |
Q |
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| T |
41189001 |
ccgtgtaaacaaa |
41188989 |
T |
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