View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1641-INSERTION-2 (Length: 347)

Name: NF1641-INSERTION-2
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1641-INSERTION-2
NF1641-INSERTION-2
[»] scaffold0182 (1 HSPs)
scaffold0182 (10-281)||(19118-19389)
[»] chr7 (11 HSPs)
chr7 (10-149)||(21752934-21753074)
chr7 (285-346)||(21717473-21717534)
chr7 (289-345)||(21648286-21648342)
chr7 (285-347)||(21683399-21683461)
chr7 (286-347)||(21728172-21728233)
chr7 (295-347)||(21653611-21653663)
chr7 (286-335)||(21803517-21803566)
chr7 (285-335)||(21995009-21995059)
chr7 (295-335)||(15715396-15715436)
chr7 (295-335)||(21765692-21765732)
chr7 (295-335)||(21793573-21793613)


Alignment Details
Target: scaffold0182 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 19389 - 19118
Alignment:
Q  10 ttgttgaatcacgtagctttgaaacgaagatatatcaacatcaaggtcactcatacatggttgtttaatttcgtataagatttacaccttttcaattcaa 109  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19389 ttgttgaatcacgtagctttgaaactaagatatattaacatcaaggtcactcatacatggttgtttaatttcgtataagatttacaccttttcaattcaa 19290  T
Q  110 ccataaccaattgattcaatcacaaattcatatattatggattatctattttcttgttttgaataaccaattggtaattcgacgagataccaattcattc 209  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19289 gcataaccaattgattcaatcacaaattcatatattatggattatctattttcttgttttgaataaccaattggtaattcgacgagataccaattcattc 19190  T
Q  210 aatgataaactacgtgttgattccctacaaagttttggaaaaatatgttctctcgaatcattcacaattttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19189 aatgataaactacgtgttgattccctacaaagttttggaaaaatatgttctctcgaatcattcacaattttt 19118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 21753074 - 21752934
Alignment:
Q  10 ttgttgaatcacgtagctttgaaacgaagatatatcaacatcaaggtcactcatacatggttgtttaatttcgtataagatttacaccttttcaattcaa 109  Q
    ||||||||||| || |||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21753074 ttgttgaatcatgtggctttgaaactaagatatatcattatcaaggtcactcatacatggttgtttaatttcgtataagatttacaccttttcaattcaa 21752975  T
Q  110 ccataaccaattgattcaatcac-aaattcatatattatgg 149  Q
     |||||||||||||||||||||| |||||||||||||||||    
T  21752974 tcataaccaattgattcaatcacaaaattcatatattatgg 21752934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 21717534 - 21717473
Alignment:
Q  285 ctgtaaacactgtctgaatgaaagtaacagcaagggctataaatgcagcaatgctgaagtaa 346  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  21717534 ctgtaaacactgtctgaatgaaagtaagagcaagggctataaatgcagcgatgctgaagtaa 21717473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 21648342 - 21648286
Alignment:
Q  289 aaacactgtctgaatgaaagtaacagcaagggctataaatgcagcaatgctgaagta 345  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  21648342 aaacactgtctgaatgaaagtaagagcaagggcgataaatgcagcaatgctgaagta 21648286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 21683461 - 21683399
Alignment:
Q  285 ctgtaaacactgtctgaatgaaagtaacagcaagggctataaatgcagcaatgctgaagtaag 347  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||    
T  21683461 ctgtaaacactgtctgaatgaaagtaagagcaatggcgataaatgcagcaatcctgaagtaag 21683399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 21728233 - 21728172
Alignment:
Q  286 tgtaaacactgtctgaatgaaagtaacagcaagggctataaatgcagcaatgctgaagtaag 347  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  21728233 tgtaaacactgtccgaatgaaagtaagagcaagggcgataaatgcagcaatcctgaagtaag 21728172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 21653663 - 21653611
Alignment:
Q  295 tgtctgaatgaaagtaacagcaagggctataaatgcagcaatgctgaagtaag 347  Q
    ||||||||||||||||| ||||||||| ||||  |||||||||||||||||||    
T  21653663 tgtctgaatgaaagtaagagcaagggcgataaccgcagcaatgctgaagtaag 21653611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 21803517 - 21803566
Alignment:
Q  286 tgtaaacactgtctgaatgaaagtaacagcaagggctataaatgcagcaa 335  Q
    |||||||| ||||||||||||||||| ||| ||||| |||||||||||||    
T  21803517 tgtaaacaatgtctgaatgaaagtaagagcgagggcaataaatgcagcaa 21803566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 21995059 - 21995009
Alignment:
Q  285 ctgtaaacactgtctgaatgaaagtaacagcaagggctataaatgcagcaa 335  Q
    ||||||||  ||||||||| ||||||| ||||||||| |||||||||||||    
T  21995059 ctgtaaaccatgtctgaattaaagtaagagcaagggcgataaatgcagcaa 21995009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 15715436 - 15715396
Alignment:
Q  295 tgtctgaatgaaagtaacagcaagggctataaatgcagcaa 335  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  15715436 tgtctgaatgaaagtaagagcaagggcgataaacgcagcaa 15715396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 21765732 - 21765692
Alignment:
Q  295 tgtctgaatgaaagtaacagcaagggctataaatgcagcaa 335  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  21765732 tgtctgaatgaaagtaagagcaagggcagtaaatgcagcaa 21765692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 21793613 - 21793573
Alignment:
Q  295 tgtctgaatgaaagtaacagcaagggctataaatgcagcaa 335  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  21793613 tgtctgaatgaaagtaagagcaagggcgataaacgcagcaa 21793573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University