View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641-INSERTION-4 (Length: 519)
Name: NF1641-INSERTION-4
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641-INSERTION-4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 251 - 519
Target Start/End: Original strand, 33080871 - 33081137
Alignment:
| Q |
251 |
ttgatttatttgaattgataatataaaatacaatcaaactaaattcaaactactttaggtaatttattttgtttttacaaaataactgattaattgaaag |
350 |
Q |
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| T |
33080871 |
ttgatttatttgaattgataatataaaatacaatcaaactaaattcaaactactttaggtaatttattttgtttttacaaaataactgattaattgaaag |
33080970 |
T |
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| Q |
351 |
ctaaattaacattaacaattcaagtggaggatatagagggaacaacatcttttgtgtgagnnnnnnnnntgataatttttccttgacacccattattggc |
450 |
Q |
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| T |
33080971 |
ctaaattaacattaacaa--caagtggaggatatagagggaacaacatcttttgtgtgagaaaataaaatgataatttttccttgacacccattattggc |
33081068 |
T |
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| Q |
451 |
ttaaattctaaccaaatttcatgcaaaaatgttctaagcatggtgcaaaggttctatttaccacatcaa |
519 |
Q |
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| T |
33081069 |
ttaaattctaaccaaatttcatgcaaaaatgttctaagcatggtgcaaaggttctatttaccacatcaa |
33081137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 33080657 - 33080838
Alignment:
| Q |
8 |
accaagtgagagcatcttggttgaaaatcattttaggaaacatggagtgtaaaataataatagtattctaggtaagaagcaagattcaaagtataaacta |
107 |
Q |
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| T |
33080657 |
accaagtgagagcatcttggttgaaaatcattttaggaaacatggagtgtaaaataataataatattctaggtaagaagcaagattcaaagtataaacta |
33080756 |
T |
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| Q |
108 |
taaatggtttcagaagagagaaaaacaacaaaaatagaaaagagctactgtacagtatatatttccgttaattaagtcatcg |
189 |
Q |
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| T |
33080757 |
taaatggtttcagaaaagagaaaaacaacaaaaatagaaaagagctactgtacagtatatatttccgttaattaagtcatcg |
33080838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 220 - 409
Target Start/End: Original strand, 33084782 - 33084991
Alignment:
| Q |
220 |
gtcattgttgttaattaagttatcgtcgattttgatttatttgaattgataatataaaatacaatcaaactaa-------attcaaactactttaggtaa |
312 |
Q |
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| T |
33084782 |
gtcatcgttgttaattaaaatatcgtcgattttgatttatttgaattgataatataaaatacaatcaaactaattgaattattcaaactactttaggtaa |
33084881 |
T |
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| Q |
313 |
tttattttgtttttacaaaataac----tgattaattgaaagcta----aattaacattaacaatt-----caagtggaggatatagagggaacaacatc |
399 |
Q |
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| T |
33084882 |
tttattttgtttttgaaaaataactaattaattaattgatagctaaattaattaacattaacatttaacaacaagtggaggatagggaggaaacaacatc |
33084981 |
T |
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| Q |
400 |
ttttgtgtga |
409 |
Q |
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| T |
33084982 |
ttttgtgtga |
33084991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 41513920 - 41514015
Alignment:
| Q |
8 |
accaagtgagagcatcttggttgaaaatcattttaggaaacatggagtgtaaaataataatagt---attctaggtaagaagcaagattcaaagta |
100 |
Q |
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| T |
41513920 |
accaagtgagagcatcttggttgaaaatcgttttaggaaacgtggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagta |
41514015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 41522884 - 41523044
Alignment:
| Q |
8 |
accaagtgagagcatcttggttgaaaatcattttaggaaacatggagtgtaaaataataatagta---ttctaggtaagaagcaaga------------t |
92 |
Q |
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| T |
41522884 |
accaagtgagagcatcttggttgaaaatcgtattaggaaacgtggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagct |
41522983 |
T |
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| Q |
93 |
tcaaagtataaactataaatggtttcagaa-gagagaaaaacaacaaaaatagaaaagagc |
152 |
Q |
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| T |
41522984 |
tcaaagtataaacaataaatggtttcagaaggatgaaaaaacaacataaatagaaaagagc |
41523044 |
T |
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