View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641-INSERTION-6 (Length: 90)
Name: NF1641-INSERTION-6
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641-INSERTION-6 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-40
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 4714215 - 4714297
Alignment:
| Q |
8 |
ctaagatcagtcacaaaagtgagattcacatcacatcttcatcaaaaacctcaatatagctgatttatgaatcatctcactca |
90 |
Q |
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| T |
4714215 |
ctaagatcagtcacaaaagtgagattcacatcacatcttcatcaaaaacctcaatatagctgatttatgaatcatctcactca |
4714297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 4704066 - 4704144
Alignment:
| Q |
8 |
ctaagatcagtcacaaaagtgagattcacatcacatcttcatcaaaaacctcaatatagctgatttatgaatcatctcact |
88 |
Q |
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| T |
4704066 |
ctaagatcagtca--aaagcgcgactcacatcacatattcatcaaagaccttaatatagttgatttatgggtcatctcact |
4704144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 210 - 250
Alignment:
| Q |
7 |
actaagatcagtcacaaaagtgagattcacatcacatcttc |
47 |
Q |
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| T |
210 |
actaagaacaatcacagaagtgagattcacatcacatcttc |
250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 20934923 - 20934963
Alignment:
| Q |
7 |
actaagatcagtcacaaaagtgagattcacatcacatcttc |
47 |
Q |
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| T |
20934923 |
actaagaacaatcacataagtgagattcacatcacatcttc |
20934963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 32976397 - 32976437
Alignment:
| Q |
7 |
actaagatcagtcacaaaagtgagattcacatcacatcttc |
47 |
Q |
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| T |
32976397 |
actaagaacaatcacagaagtgagattcacatcacatcttc |
32976437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 20306659 - 20306699
Alignment:
| Q |
7 |
actaagatcagtcacaaaagtgagattcacatcacatcttc |
47 |
Q |
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| T |
20306659 |
actaagaacaatcacagaagtgagattcacatcacatcttc |
20306699 |
T |
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