View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1641-INSERTION-7 (Length: 359)

Name: NF1641-INSERTION-7
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1641-INSERTION-7
NF1641-INSERTION-7
[»] chr1 (1 HSPs)
chr1 (8-359)||(7265999-7266351)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 7266351 - 7265999
Alignment:
Q  8 gtttttaagtctttgcatttgtaccggacacatttgatcgtacttcgatataatatcaagaattgtgaccgcaagtaaaatataaaataatatcataatc 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7266351 gtttttaagtctttgcatttgcaccggacacatttgatcgtacttcgatataatatcaagaattgtgaccgcaagtaaaacataaaataatatcataatc 7266252  T
Q  108 atgtatctaagtcttcctgaatacactttcttaatttgccaacaacttttgatagaaaaaa-tagattcatttcataaggaattaattcttattcttagt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7266251 atgtatctaagtcttcctgaatacactttcttaatttgccaacaacttttgatagaaaaaaatagattcatttcataaggaattaattcttattcttagt 7266152  T
Q  207 atataaaatcatgtatctttttgttgagctattttgtagtatatattgctttgcatttgttaaatttgctttggattcttttgcatgcatatgtcaagga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7266151 atataaaatcatgtatctttttgttgagctattttgtagtatatattgctttccatttgttaaatttgctttggattcttttgcatgcatatgtcaagga 7266052  T
Q  307 gctgaaaaatttctcttcattatacttttaacgacagggctgcgatgcatcaa 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7266051 gctgaaaaatttctcttcattgtacttttaacgacagggctgcgatgcatcaa 7265999  T

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