View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641-INSERTION-8 (Length: 536)
Name: NF1641-INSERTION-8
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641-INSERTION-8 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 43394416 - 43394159
Alignment:
| Q |
8 |
gtaacttgaaaacatggacatctttgaacattttgaaaatattctttttctggtatatgtttgttttaccaacaaatttacttttgatggccccttccaa |
107 |
Q |
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| T |
43394416 |
gtaacttgaaaatatggacatctttaaacattttgaaaatattcttttttcggtttatgtttgttttatcaacaaatttacttttgatggccccttccaa |
43394317 |
T |
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| Q |
108 |
tatgctataacgattaatactatattcttcaatgacgctttctaagattattcaatgactccttctaagatttcgaaaaacataaaaattattttccaaa |
207 |
Q |
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| T |
43394316 |
tatgctataacgattaatactatattcttcaatgacgctttctaagattatttagtgactccttctaagatttcgaaaaatataaaaattatttttcaaa |
43394217 |
T |
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| Q |
208 |
caaatatgatagtttctattcaataactcatgaaatgaaatgagataattatttatga |
265 |
Q |
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| T |
43394216 |
caaatatgatagtttctattcaataacccatgaaatgaaatgagataattatttatga |
43394159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 311 - 536
Target Start/End: Complemental strand, 43394113 - 43393886
Alignment:
| Q |
311 |
agccatcacccaagtaataatatgatggaattgcaaatgggt--gttatattttctattactactgtcggaacttgctgcaaatgaactacaacggtatg |
408 |
Q |
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| T |
43394113 |
agccatcacccaagtaataatatgatggaattgcaaatgggtttgttatattttctattactactgttggaacttgctgcaaatgaactgcaacggtatg |
43394014 |
T |
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| Q |
409 |
gagcctttatccactcaaactaagatgacggcgaaaaatttgttgttacgaagctctctcgttggtcgtgaatggaatcgacggtggcattgccgattca |
508 |
Q |
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| T |
43394013 |
gagcctttatccacccaaactaagatgacgccgaaaaatttgttgttacgaagctctctcgttggtcgtaaatggaatcgacggtggcattgccgattca |
43393914 |
T |
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| Q |
509 |
tcaaatggttgttggacctgaacatgga |
536 |
Q |
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| T |
43393913 |
tcaaatggttgttggacctgaacatgga |
43393886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 17547306 - 17547403
Alignment:
| Q |
356 |
atattttctat--tactactgtcggaacttgctgcaaatgaactacaacggtatggagcctttatccactcaaactaagatgacggcgaaaaatttgt |
451 |
Q |
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| T |
17547306 |
atattttctatcctactactgctggaacctgccgcagatgaactagggcggtatggagcctttatccactgaaaccaagatgaagccgagaaatttgt |
17547403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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