View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1641-INSERTION-9 (Length: 706)

Name: NF1641-INSERTION-9
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1641-INSERTION-9
NF1641-INSERTION-9
[»] chr1 (32 HSPs)
chr1 (511-706)||(30325022-30325220)
chr1 (265-343)||(30324862-30324940)
chr1 (163-267)||(30333507-30333614)
chr1 (356-477)||(30336597-30336722)
chr1 (7-88)||(30342346-30342427)
chr1 (511-617)||(7438630-7438737)
chr1 (529-608)||(42937226-42937306)
chr1 (7-74)||(30333385-30333452)
chr1 (511-617)||(34702292-34702399)
chr1 (511-617)||(50065019-50065126)
chr1 (521-617)||(15417806-15417903)
chr1 (529-617)||(43109235-43109324)
chr1 (529-617)||(50011516-50011605)
chr1 (511-617)||(2017664-2017770)
chr1 (511-617)||(4684156-4684263)
chr1 (417-451)||(30324957-30324991)
chr1 (529-618)||(40061451-40061541)
chr1 (529-609)||(12148570-12148651)
chr1 (529-617)||(47651881-47651969)
chr1 (529-617)||(49619981-49620070)
chr1 (529-608)||(8893878-8893958)
chr1 (511-617)||(12973257-12973364)
chr1 (232-267)||(30321775-30321810)
chr1 (523-562)||(35309789-35309828)
chr1 (511-617)||(50302830-50302937)
chr1 (529-618)||(10123050-10123139)
chr1 (178-212)||(30337670-30337704)
chr1 (521-562)||(3347692-3347733)
chr1 (531-563)||(4126963-4126995)
chr1 (529-608)||(25031494-25031574)
chr1 (508-618)||(25421862-25421974)
chr1 (529-561)||(27054762-27054794)
[»] chr7 (14 HSPs)
chr7 (529-617)||(24029994-24030083)
chr7 (508-608)||(43440707-43440808)
chr7 (511-617)||(12166091-12166198)
chr7 (511-618)||(37918688-37918796)
chr7 (529-617)||(34322021-34322110)
chr7 (529-617)||(48433707-48433796)
chr7 (529-608)||(4956089-4956169)
chr7 (511-617)||(33248781-33248888)
chr7 (529-617)||(31793477-31793566)
chr7 (529-596)||(18128902-18128970)
chr7 (511-563)||(23602338-23602390)
chr7 (511-559)||(28712435-28712483)
chr7 (511-563)||(32376503-32376555)
chr7 (511-618)||(48619805-48619912)
[»] chr6 (7 HSPs)
chr6 (511-618)||(1128395-1128506)
chr6 (529-617)||(9357165-9357254)
chr6 (529-617)||(17216967-17217056)
chr6 (511-608)||(29321955-29322053)
chr6 (529-618)||(30422105-30422195)
chr6 (529-617)||(19748108-19748196)
chr6 (529-561)||(5948937-5948969)
[»] chr4 (15 HSPs)
chr4 (529-617)||(25234855-25234944)
chr4 (529-617)||(36993050-36993139)
chr4 (529-603)||(22341859-22341934)
chr4 (511-617)||(46283131-46283238)
chr4 (529-617)||(16556460-16556549)
chr4 (525-617)||(45847919-45848012)
chr4 (525-617)||(48404130-48404223)
chr4 (529-608)||(45355715-45355794)
chr4 (529-608)||(45369456-45369535)
chr4 (529-567)||(25104387-25104425)
chr4 (528-608)||(24570228-24570309)
chr4 (529-608)||(42154584-42154664)
chr4 (511-553)||(51707193-51707235)
chr4 (508-553)||(2931138-2931183)
chr4 (531-563)||(44251326-44251358)
[»] chr2 (10 HSPs)
chr2 (529-617)||(34107504-34107592)
chr2 (529-608)||(3330198-3330278)
chr2 (529-608)||(25553143-25553222)
chr2 (529-608)||(19843360-19843440)
chr2 (529-607)||(33065254-33065333)
chr2 (511-566)||(43027216-43027271)
chr2 (529-567)||(6270491-6270529)
chr2 (525-563)||(6866572-6866610)
chr2 (529-563)||(29090479-29090513)
chr2 (529-617)||(31149099-31149187)
[»] chr3 (15 HSPs)
chr3 (511-617)||(38668137-38668244)
chr3 (511-617)||(39739283-39739390)
chr3 (511-608)||(31435480-31435578)
chr3 (529-617)||(47864645-47864734)
chr3 (529-618)||(50381722-50381812)
chr3 (529-617)||(33528202-33528291)
chr3 (529-617)||(22602200-22602289)
chr3 (511-618)||(27471512-27471620)
chr3 (529-617)||(27817065-27817153)
chr3 (525-566)||(166849-166890)
chr3 (511-556)||(1325310-1325355)
chr3 (529-617)||(9320956-9321045)
chr3 (525-553)||(9738430-9738458)
chr3 (511-563)||(29645806-29645858)
chr3 (511-603)||(44062021-44062113)
[»] chr5 (10 HSPs)
chr5 (511-608)||(930917-931015)
chr5 (511-566)||(15470600-15470655)
chr5 (521-563)||(42208980-42209022)
chr5 (529-563)||(4395848-4395882)
chr5 (583-617)||(15696216-15696250)
chr5 (511-608)||(26671601-26671699)
chr5 (511-608)||(26943198-26943296)
chr5 (523-556)||(3294154-3294187)
chr5 (531-563)||(27691277-27691309)
chr5 (529-617)||(34729481-34729569)
[»] chr8 (11 HSPs)
chr8 (529-617)||(1032579-1032668)
chr8 (511-617)||(38289214-38289321)
chr8 (525-617)||(41845422-41845515)
chr8 (529-608)||(43413883-43413963)
chr8 (529-617)||(19733066-19733155)
chr8 (529-605)||(33820392-33820469)
chr8 (525-563)||(11690947-11690985)
chr8 (525-617)||(44828425-44828519)
chr8 (529-605)||(3728225-3728302)
chr8 (529-566)||(38064038-38064075)
chr8 (529-608)||(10201280-10201360)
[»] scaffold0072 (1 HSPs)
scaffold0072 (529-565)||(17730-17766)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 511 - 706
Target Start/End: Original strand, 30325022 - 30325220
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatcccttatc 610  Q
    ||||||||| ||| ||| ||||||||| |||||||||||||||||  |||||  |  || ||||| ||||| ||||||||||| ||||||||||||||||    
T  30325022 aagtagtttagtggctagagaaattcatcttaaagatgaataaatagggtgttcgagttcgagcctcaacccctacacatattatgcattatcccttatc 30325121  T
Q  611 aattgagtgacaagtcatcttgataattacttaraagccataaataaattggaccatagagagg-attgtacgtac-atcacctg-tggttgtcgtttt 706  Q
    || |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||| || ||||||||||    
T  30325122 aaatgagtgacaaatcatcttgataattacttagaagccataaataaattggaccatatagaggaattgtacgtacaatcacctgttgtttgtcgtttt 30325220  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 30324862 - 30324940
Alignment:
Q  265 ttgcaacctcattggatttgtgtgtgagtacttgagtgagtaggttcttgtattgcatgttgtaacaagactcctcatt 343  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30324862 ttgcaacctcattgtatttgtgtgtgagtacttgagtgagtaggttcttgtattgcatgttgtaacaagactcctcatt 30324940  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 30333507 - 30333614
Alignment:
Q  163 gcttttactattaaagtctcgtttgtttgaattccctaaagtcacttgttgtgaca---ccttgaattgcagaaatgtaattttagagatttaatcagtt 259  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||  |||||||||||||| ||||||||| |||||||||||    
T  30333507 gcttttactattaaagtctcgtttgtttgaatgccctaaagtcacttgttgtgacacttcctcaaattgcagaaatgtgattttagaggtttaatcagtt 30333606  T
Q  260 tttgtttg 267  Q
    ||||||||    
T  30333607 tttgtttg 30333614  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 356 - 477
Target Start/End: Original strand, 30336597 - 30336722
Alignment:
Q  356 caagactccaattcttatccattttcatttgttgctaat----ccaaatttttatccatggactgtgtacttaacttgaatcaaaacattattacattgt 451  Q
    |||||||||||||||||||||| |||||||||||||||     ||||||| ||||||||  ||||||||||||| |||||| ||| ||||||||||||      
T  30336597 caagactccaattcttatccatcttcatttgttgctaaataaaccaaattgttatccatctactgtgtacttaatttgaattaaaccattattacattaa 30336696  T
Q  452 cattctcatgacttaatgtaaataaa 477  Q
    ||||||| || |||||||||||||||    
T  30336697 cattctcctggcttaatgtaaataaa 30336722  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 30342427 - 30342346
Alignment:
Q  7 acaatttaagtggtcgaatcactttctcaactagagttggacagaagttgaaattgacaggaaatatagggctgtgtttggg 88  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||    
T  30342427 acaatttgagtggtagaatcactttctcaactagagttggacagaagttaaagttggcaggaaatgtagggctgtgtttggg 30342346  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 7438737 - 7438630
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||| ||||||||||||||||| ||||||||||| || |||||| ||| || || |||| ||| ||||||| ||||||||||||||||||     
T  7438737 aagtagtctagtggctaaagaaattcacctttaagatgaataagtggggtgtccggagttcgaaccccgacccctacacaaattgtgcattatcccttac 7438638  T
Q  610 caattgag 617  Q
    ||| ||||    
T  7438637 caaatgag 7438630  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 42937226 - 42937306
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||||| ||||||||| | || || | |||||| || ||||||||||||||||| |||||    
T  42937226 agaaattcaccttaaagatgaataaataaggtgtctgaagttcgaactccaacccctgcacatattgtgcattattcctta 42937306  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 30333385 - 30333452
Alignment:
Q  7 acaatttaagtggtcgaatcactttctcaactagagttggacagaagttgaaattgacaggaaatata 74  Q
    ||||||| ||||||  ||||||||||||| | |||||||||||||||||||| ||| |||||||||||    
T  30333385 acaatttgagtggtataatcactttctcagccagagttggacagaagttgaagttggcaggaaatata 30333452  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 34702292 - 34702399
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||| ||||||||||||| ||||||||||||||| |||||||| | || || || ||||  || || |||||||||||||||||||||||     
T  34702292 aagtagtctagtggctaaagaaattcatcttaaagatgaataagtgaggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttac 34702391  T
Q  610 caattgag 617  Q
    ||| ||||    
T  34702392 caaatgag 34702399  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 50065126 - 50065019
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctg-gatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    |||||| || ||| ||| ||||||||||||||||||||||||| || |||||| | |||| || ||||   | || ||||||||||||||||||||||||    
T  50065126 aagtagcttagtggctagagaaattcaccttaaagatgaataagtggggtgtccgagattcgaaccccggtccctgcacatattgtgcattatcccttat 50065027  T
Q  610 caattgag 617  Q
    ||| ||||    
T  50065026 caaatgag 50065019  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 521 - 617
Target Start/End: Original strand, 15417806 - 15417903
Alignment:
Q  521 gtgactaaagaaattcaccttaaagatgaataaatgaggtgtctg-gatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||| ||||||||| ||||||||||||||| || |||||| | | || || ||||| || |||||||||||||||||||||| ||| ||| ||||    
T  15417806 gtgactagagaaattcatcttaaagatgaataagtggggtgtccgagcttcgaaccccagcccctacacatattgtgcattatcctttaccaaatgag 15417903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 43109235 - 43109324
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||||||||||||||||||||||||||| | || || || ||||  || || |||||||| |||||||||||||| ||| ||||    
T  43109235 agaaattcaccttaaagatgaataaatgaggtgtccggggttcgaaccccggcccctgcacatattttgcattatcccttaccaaatgag 43109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 50011605 - 50011516
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || | ||||| || || || ||||| || || ||||||||||||||||||||||| ||| ||||    
T  50011605 agaaattcaccttaaagatgaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgag 50011516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 2017664 - 2017770
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctgg-atttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||||| ||| ||| |||||||||||||||| ||||| || || |||||| || ||| || ||||| ||| | |||||||||||||||||||||||     
T  2017664 aagtagtttagtggctagagaaattcaccttaaa-atgaacaagtggggtgtccgggattcgaaccccagcctatgcacatattgtgcattatcccttac 2017762  T
Q  610 caattgag 617  Q
    ||| ||||    
T  2017763 caaatgag 2017770  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 4684156 - 4684263
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||||| ||| ||| || ||||||||||||||||||||||||| ||| || | | || || |||| ||| ||||| ||||||| ||||||||||||     
T  4684156 aagtagtttagtggctagagtaattcaccttaaagatgaataaatggggtatccgaacttcgaaccccgacccctacatatattgtacattatcccttac 4684255  T
Q  610 caattgag 617  Q
    ||| ||||    
T  4684256 caaatgag 4684263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 30324957 - 30324991
Alignment:
Q  417 tgtacttaacttgaatcaaaacattattacattgt 451  Q
    |||||||||||||||||||||||||||||||||||    
T  30324957 tgtacttaacttgaatcaaaacattattacattgt 30324991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 618
Target Start/End: Complemental strand, 40061541 - 40061451
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatcccttatcaattgagt 618  Q
    |||||| |||||||||||||||||| || |||||| ||| || || ||||| || ||| |||||||||||| ||||||||| ||| |||||    
T  40061541 agaaatccaccttaaagatgaataagtggggtgtccggagttcgaaccccagcccctatacatattgtgcactatcccttaccaaatgagt 40061451  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 12148570 - 12148651
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||||||||||||||||||||| || ||||||| || ||||| | || ||| || |||||||||| ||||||| |||||    
T  12148570 agaaattcaccttaaagatgaataagtggggtgtctggggtttgaactccgacccctgcacatattgtacattatcgcttat 12148651  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 47651969 - 47651881
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||||||||| |||||||| || | ||||| ||||| || ||||| || || ||||||||||||||||||||||| ||| ||||    
T  47651969 agaaattcaccttaaa-atgaataagtgggatgtctaggattcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgag 47651881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 49620070 - 49619981
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggatt-tgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||| |||||||||||||| || |||||| ||  | ||| |||| ||| || ||||||||||||||||||||||| ||| ||||    
T  49620070 agaaattcactttaaagatgaataagtggggtgtccggggtctgaaccccgacccctgcacatattgtgcattatcccttaccaaatgag 49619981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 608
Target Start/End: Complemental strand, 8893958 - 8893878
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| || ||||| | || || || |||| ||| ||  ||||||||||||||||||||||    
T  8893958 agaaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctgtacatattgtgcattatccctta 8893878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 12973257 - 12973364
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||| ||||||||||| ||||||||||||||||| || |||||| ||| |||||  | |  || || || ||||||||||||||||||||     
T  12973257 aagtagtctagtggctaaagaaatttaccttaaagatgaataagtggggtgtcaggagtttgaatctcggcccctgcatatattgtgcattatcccttac 12973356  T
Q  610 caattgag 617  Q
    ||| ||||    
T  12973357 caaatgag 12973364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 30321775 - 30321810
Alignment:
Q  232 aaatgtaattttagagatttaatcagtttttgtttg 267  Q
    |||| |||||||||||||||||||||||||||||||    
T  30321775 aaatataattttagagatttaatcagtttttgtttg 30321810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 562
Target Start/End: Complemental strand, 35309828 - 35309789
Alignment:
Q  523 gactaaagaaattcaccttaaagatgaataaatgaggtgt 562  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  35309828 gactaaagaaattcaccttaaagatgaataagtggggtgt 35309789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 50302830 - 50302937
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctggatttgagcccca-acctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||| ||| ||||||||||||||||||||||||| |   ||||| || || || |||||  ||||| |||||||| ||||||||||||||     
T  50302830 aagtagtctagtggctagagaaattcaccttaaagatgaataagtagagtgtcagggttcgaaccccagccctctgcacatattatgcattatcccttac 50302929  T
Q  610 caattgag 617  Q
    ||| ||||    
T  50302930 caaatgag 50302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 618
Target Start/End: Original strand, 10123050 - 10123139
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgagt 618  Q
    ||||||||||||||||||||||||| || ||||| | || || || |||| ||| |||||||||||||  ||||||||||| ||| |||||    
T  10123050 agaaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctacacatattgt-aattatcccttaccaaatgagt 10123139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 30337670 - 30337704
Alignment:
Q  178 gtctcgtttgtttgaattccctaaagtcacttgtt 212  Q
    |||| ||||||||||||||||||||||||||||||    
T  30337670 gtcttgtttgtttgaattccctaaagtcacttgtt 30337704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 562
Target Start/End: Original strand, 3347692 - 3347733
Alignment:
Q  521 gtgactaaagaaattcaccttaaagatgaataaatgaggtgt 562  Q
    ||||||| ||||||||||||||||||||||||| || |||||    
T  3347692 gtgactagagaaattcaccttaaagatgaataagtggggtgt 3347733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 563
Target Start/End: Complemental strand, 4126995 - 4126963
Alignment:
Q  531 aaattcaccttaaagatgaataaatgaggtgtc 563  Q
    |||||||||||||||||||||||||| ||||||    
T  4126995 aaattcaccttaaagatgaataaatggggtgtc 4126963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 25031494 - 25031574
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgg-atttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| || |||||| || ||| || ||||  || || |||||||| ||||||||| ||||    
T  25031494 agaaattcaccttaaagatgaataagtggggtgtccggaattcgaaccccggcccctgcacatattatgcattatctctta 25031574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 508 - 618
Target Start/End: Complemental strand, 25421974 - 25421862
Alignment:
Q  508 gttaagtagtttggtgactaaagaaattcacc-ttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatccc 605  Q
    |||||||||||| |||  || ||||||||||| || ||| ||||||| ||  |||||| || ||||| ||||| || ||||||| |||||||||| ||||    
T  25421974 gttaagtagtttagtggttagagaaattcaccttttaaggtgaataagtggagtgtctggggtttgaaccccagcccctacacaaattgtgcattgtccc 25421875  T
Q  606 ttatcaattgagt 618  Q
    ||| ||| |||||    
T  25421874 ttaccaaatgagt 25421862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 561
Target Start/End: Complemental strand, 27054794 - 27054762
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtg 561  Q
    ||||||||||||||||||||||||| |||||||    
T  27054794 agaaattcaccttaaagatgaataagtgaggtg 27054762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 24030083 - 24029994
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||||||||||||||||||||| ||||||| || || || ||||  || |||||||||||||||||||||||||||||| ||||    
T  24030083 agaaattcaccttaaagatgaataaatggggtgtctggggttcgaaccccggcccctacacatattgtgcattatcccttatcaaatgag 24029994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 508 - 608
Target Start/End: Complemental strand, 43440808 - 43440707
Alignment:
Q  508 gttaagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctgg-atttgagccccaacctctacacatattgtgcattatccct 606  Q
    ||||| |||| | ||| ||| ||||||||||||||||||||||||| || ||||||||| ||| || |||| |||||| |||||||||||||||||||||    
T  43440808 gttaaatagtctagtggctagagaaattcaccttaaagatgaataagtggggtgtctggaattcgaaccccgacctctgcacatattgtgcattatccct 43440709  T
Q  607 ta 608  Q
    ||    
T  43440708 ta 43440707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 12166198 - 12166091
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||||| ||  ||| ||||||||||||||||||||||||| || ||||||| || || || ||||| || || |||| ||||||||||||||||||     
T  12166198 aagtagtttagtagctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatcccttac 12166099  T
Q  610 caattgag 617  Q
    ||| ||||    
T  12166098 caaatgag 12166091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 511 - 618
Target Start/End: Complemental strand, 37918796 - 37918688
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtc--tggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||| |||  || |||||||||||| |||||||||||| |||||||||   ||||| || |||| ||  |||||||| |||||||||||||||||    
T  37918796 aagtagtttagtggttagagaaattcacctaaaagatgaataagtgaggtgtccggggattcgaaccccgacgcctacacat-ttgtgcattatccctta 37918698  T
Q  609 tcaattgagt 618  Q
    |||| |||||    
T  37918697 tcaaatgagt 37918688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 34322021 - 34322110
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgg-atttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||| || |||||||||||||| ||||||||| |||  | |||||  | || ||||||||||||||||||||||||||| ||||    
T  34322021 agaaattcacgtttaagatgaataaatggggtgtctgggattcaaaccccagtccctgcacatattgtgcattatcccttatcaaatgag 34322110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 48433707 - 48433796
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || ||||| | || ||||| ||||  || || ||||||||||||||||||||||| ||| ||||    
T  48433707 agaaattcaccttaaagatgaataagtggggtgtccggggtttgaaccccggcccctgcacatattgtgcattatcccttaccaaatgag 48433796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 4956089 - 4956169
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| || ||||| | || || || |||| ||| || |||||||||||||||||||||||    
T  4956089 agaaattcaccttaaagatgaataagtggggtgtccagggttcgaaccccgacccctgcacatattgtgcattatccctta 4956169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 33248781 - 33248888
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||||| ||||||||||||||||||||||||||| |  ||||| | || || || |||| |||||| || ||||||||||| ||||||||     
T  33248781 aagtagtctagtgacgaaagaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacctctgcatatattgtgcatcatcccttac 33248880  T
Q  610 caattgag 617  Q
    ||| ||||    
T  33248881 caaatgag 33248888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 31793566 - 31793477
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||| |||||||||||||||||| || |||||| ||  || || |||| ||| || ||||||||||||||||||||||| ||| ||||    
T  31793566 agaaatccaccttaaagatgaataagtggggtgtccggggttcgaaccccgacccctgcacatattgtgcattatcccttaacaaatgag 31793477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 596
Target Start/End: Original strand, 18128902 - 18128970
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtg-tctggatttgagccccaacctctacacatattgtg 596  Q
    ||||||||||||||||||||||||| |||| || || || |||||||||  ||| ||||||||||||||    
T  18128902 agaaattcaccttaaagatgaataagtgagttgttcggggtttgagcccggacccctacacatattgtg 18128970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 563
Target Start/End: Complemental strand, 23602390 - 23602338
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    ||||||| | ||| ||||||||||||||||||||| ||||||| |||||||||    
T  23602390 aagtagtctagtggctaaagaaattcaccttaaaggtgaataagtgaggtgtc 23602338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 28712483 - 28712435
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgagg 559  Q
    |||||| || ||||||| |||||||||| ||||||||||||||||||||    
T  28712483 aagtagcttagtgactagagaaattcactttaaagatgaataaatgagg 28712435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 563
Target Start/End: Complemental strand, 32376555 - 32376503
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    ||||||||| | | ||||||||||||||||||||| |||||||||| ||||||    
T  32376555 aagtagtttagcggctaaagaaattcaccttaaagttgaataaatggggtgtc 32376503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 618
Target Start/End: Complemental strand, 48619912 - 48619805
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatcccttatc 610  Q
    |||||| || ||| ||| ||||||||||||||||||||||||| ||  ||||||| | ||    ||||||| || |||||||||| |||||||| ||| |    
T  48619912 aagtagcttagtggctagagaaattcaccttaaagatgaataagtggagtgtctgaagttcgaacccaacccctgcacatattgtacattatcctttacc 48619813  T
Q  611 aattgagt 618  Q
    || |||||    
T  48619812 aaatgagt 48619805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 511 - 618
Target Start/End: Original strand, 1128395 - 1128506
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatga---ataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatccct 606  Q
    ||||||| | ||||||| |||||||||||||||||||||   ||||||| |||||||||  || || |||||||| || |||||||| ||||||||||||    
T  1128395 aagtagtctagtgactagagaaattcaccttaaagatgatgaataaatggggtgtctggggttcgaaccccaacccctgcacatattatgcattatccct 1128494  T
Q  607 tatcaattgagt 618  Q
    |||||| |||||    
T  1128495 tatcaaatgagt 1128506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 9357254 - 9357165
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||| ||||||||| ||||||||||| || || ||||| || || |||| ||||| |||||||||||||||| ||||    
T  9357254 agaaattcaccttaaaggtgaataaattaggtgtctggagttcgaaccccagcccctgcacaaattgtacattatcccttatcaaatgag 9357165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 17217056 - 17216967
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || |||||| ||| || || | || ||| ||||||||||| |||||||||||||| ||| ||||    
T  17217056 agaaattcaccttaaagatgaataagtggggtgtccggagttcgaactccgacccctacacatattatgcattatcccttaccaaatgag 17216967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 608
Target Start/End: Original strand, 29321955 - 29322053
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||| | ||| ||| ||||||||||||||||||| ||||| || | ||||| || || || ||||| || || |||||||||||||||||||||||    
T  29321955 aagtagtctagtggctagagaaattcaccttaaagataaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcattatccctta 29322053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 618
Target Start/End: Original strand, 30422105 - 30422195
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatcccttatcaattgagt 618  Q
    |||||||||||||||| || |||||||| |||||| ||| || || |||  ||| ||||||||||||| |||||||||||| ||| |||||    
T  30422105 agaaattcaccttaaaaataaataaatgtggtgtccggagttcgaacccggacccctacacatattgtacattatcccttaccaaatgagt 30422195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 19748196 - 19748108
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctg-gatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||||||||| |||||||| || |||||| | | || || |||||| | || ||||||||||||||||||||||| ||| ||||    
T  19748196 agaaattcaccttaaa-atgaataagtggggtgtccgtggttcgaaccccaatccctgcacatattgtgcattatcccttaccaaatgag 19748108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 561
Target Start/End: Complemental strand, 5948969 - 5948937
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtg 561  Q
    ||||||||||||||||||||||||| |||||||    
T  5948969 agaaattcaccttaaagatgaataagtgaggtg 5948937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 25234855 - 25234944
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || ||||||| || || || || ||||| |||||| ||||||||||||||||||||||| ||||    
T  25234855 agaaattcaccttaaagatgaataactggggtgtctggggttcgaacctcaacccctacacttattgtgcattatcccttatcaaatgag 25234944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 36993139 - 36993050
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggatttgag-ccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || |||||| ||  || |  |||||||| || ||||||||||||||||||||||||||| ||||    
T  36993139 agaaattcaccttaaagatgaataattggggtgtccggggttcaaaccccaaccccttcacatattgtgcattatcccttatcaaatgag 36993050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 603
Target Start/End: Original strand, 22341859 - 22341934
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgg-atttgagccccaacctctacacatattgtgcattatc 603  Q
    ||||||||||||| |||||||| || || ||||| ||| |||||| |||||||| |||||||||||||||||||||    
T  22341859 agaaattcacctttaagatgaacaagtggggtgtttgggatttgaaccccaacccctacacatattgtgcattatc 22341934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 46283238 - 46283131
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||||||| ||||||||||||||||||||||||| || ||||| | || || || ||||  || || |||||||||||||||||||||||     
T  46283238 aagtagtctagtgactagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggccgctgcacatattgtgcattatcccttac 46283139  T
Q  610 caattgag 617  Q
    ||| ||||    
T  46283138 caaatgag 46283131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 16556549 - 16556460
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtg-tctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || |||| || || || || |||| ||| || ||||||||||||||||||||||| ||| ||||    
T  16556549 agaaattcaccttaaagatgaataagtggggtgttcggggttcgaaccccgacccctgcacatattgtgcattatcccttaccaaatgag 16556460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 617
Target Start/End: Original strand, 45847919 - 45848012
Alignment:
Q  525 ctaaagaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||||||| || ||||| | || || || |||| | | || |||||||| |||||||||||||||||| ||||    
T  45847919 ctaaagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccgatccctgcacatattatgcattatcccttatcaaatgag 45848012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 617
Target Start/End: Original strand, 48404130 - 48404223
Alignment:
Q  525 ctaaagaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||||||| ||||||||| ||  || || |||| ||  ||||||||||| | ||||||| |||||||| ||||    
T  48404130 ctaaagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaaccccgacacctacacatattatacattatctcttatcaaatgag 48404223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 45355715 - 45355794
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| || |||||| ||  || || |||| ||| ||||||||||||||||||||||||||    
T  45355715 agaaattcaccttaaagatgaataagtg-ggtgtccggggttcgaaccccgacccctacacatattgtgcattatccctta 45355794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 45369456 - 45369535
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| || |||||| ||  || || |||| ||| ||||||||||||||||||||||||||    
T  45369456 agaaattcaccttaaagatgaataagtg-ggtgtccggggttcgaaccccgacccctacacatattgtgcattatccctta 45369535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 567
Target Start/End: Complemental strand, 25104425 - 25104387
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgga 567  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  25104425 agaaattcaccttaaagatgaataaatgaggtatctgga 25104387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 608
Target Start/End: Complemental strand, 24570309 - 24570228
Alignment:
Q  528 aagaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    |||||||||||||||||| ||||||| |  ||||| | || || || |||||||| ||||| ||||||||||||||||||||    
T  24570309 aagaaattcaccttaaagttgaataagtagggtgttcggggttcgaaccccaacccctacatatattgtgcattatccctta 24570228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 608
Target Start/End: Complemental strand, 42154664 - 42154584
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||| ||| ||| ||||| ||  || || |||| |||||| ||||||||||| |||||||||||    
T  42154664 agaaattcaccttaaagatgattaagtgaagtgtccggggttcgaaccccgacctctgcacatattgtgaattatccctta 42154584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 553
Target Start/End: Complemental strand, 51707235 - 51707193
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataa 553  Q
    ||||||||| ||| | |||||||||||||||||||||||||||    
T  51707235 aagtagtttagtggccaaagaaattcaccttaaagatgaataa 51707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 553
Target Start/End: Complemental strand, 2931183 - 2931138
Alignment:
Q  508 gttaagtagtttggtgactaaagaaattcaccttaaagatgaataa 553  Q
    |||||||||| | ||| ||| |||||||||||||||||||||||||    
T  2931183 gttaagtagtctagtggctagagaaattcaccttaaagatgaataa 2931138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 563
Target Start/End: Original strand, 44251326 - 44251358
Alignment:
Q  531 aaattcaccttaaagatgaataaatgaggtgtc 563  Q
    |||||||||||||||||||||||||| ||||||    
T  44251326 aaattcaccttaaagatgaataaatggggtgtc 44251358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 34107592 - 34107504
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || |||||| || ||||| |||  ||| || ||||||||||||||||||||||| ||| ||||    
T  34107592 agaaattcaccttaaagatgaataagtggggtgtccgggtttgaaccctgacccctgcacatattgtgcattatcccttaccaaatgag 34107504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 3330198 - 3330278
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| || |||||| ||  || || | || |||||| |||||||||||||||||||||||    
T  3330198 agaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgacctctgcacatattgtgcattatccctta 3330278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 25553143 - 25553222
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||| ||||||||||||||| ||  || ||||  || || |||||| |||| |||||||||||||||||||||||    
T  25553143 agaaattcatcttaaagatgaataagtggagtatctgagttcgaaccccaatctctgcacatattgtgcattatccctta 25553222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 19843360 - 19843440
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| |||||||||| || || || |||  ||| || |||||||||| ||| ||||||||    
T  19843360 agaaattcaccttaaagatgaataagtgaggtgtctagggttcgaaccctgacccctgcacatattgtacatcatccctta 19843440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 33065254 - 33065333
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgga-tttgagccccaacctctacacatattgtgcattatccctt 607  Q
    ||||||||||||||||||||||||| |  |||||  ||| || || |||| ||| ||||||| |||||||||||||||||    
T  33065254 agaaattcaccttaaagatgaataagtagggtgttcggagttcgaaccccgacccctacacacattgtgcattatccctt 33065333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 566
Target Start/End: Complemental strand, 43027271 - 43027216
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctgg 566  Q
    ||||||| | ||| ||| ||||||||||||||||| |||||||||| |||||||||    
T  43027271 aagtagtctagtggctagagaaattcaccttaaaggtgaataaatggggtgtctgg 43027216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 567
Target Start/End: Complemental strand, 6270529 - 6270491
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgga 567  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  6270529 agaaattcaccttaaagataaataagtgaggtgtctgga 6270491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 6866610 - 6866572
Alignment:
Q  525 ctaaagaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  6866610 ctaaagaaattcaccttaaagataaataagtgaggtgtc 6866572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 563
Target Start/End: Complemental strand, 29090513 - 29090479
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    ||||||||||||||||||||||||| |||||||||    
T  29090513 agaaattcaccttaaagatgaataagtgaggtgtc 29090479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 31149099 - 31149187
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||| || || || |||||||||  || || || ||||| || ||||||||||||||||||||||| ||| ||||    
T  31149099 agaaattcaccttaaagattaaaaagtggggtgtctggggttcgaacctcaacc-ctgcacatattgtgcattatcccttaccaaatgag 31149187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 38668244 - 38668137
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtc-tggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||| ||| ||||||||||||||||||||||||| || ||||||  |||||| | | |||||| |||||| |||||||||||||||||||     
T  38668244 aagtagtctagtggctagagaaattcaccttaaagatgaataagtggggtgtcagggatttcaactccaacccctacacgtattgtgcattatcccttac 38668145  T
Q  610 caattgag 617  Q
    ||| ||||    
T  38668144 caaatgag 38668137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 39739390 - 39739283
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||| ||| ||||||||||||||||||||||||| |||||||| | || || || |||||| | || |||||||||||||||||||||||     
T  39739390 aagtagtctagtggctagagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaaccccaatccctgcacatattgtgcattatcccttac 39739291  T
Q  610 caattgag 617  Q
    ||| ||||    
T  39739290 caaatgag 39739283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 511 - 608
Target Start/End: Original strand, 31435480 - 31435578
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctg-gatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||| | ||| ||| ||||||||||||||||||||||||| || | |||| | | || || |||||||| ||||||||||||||||||||||||||    
T  31435480 aagtagtctagtggctagagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaaccccaacccctacacatattgtgcattatccctta 31435578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 47864734 - 47864645
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || |||||| ||  || || |||||||| || ||||||||||||||||||||||| ||| ||||    
T  47864734 agaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccaacccctgcacatattgtgcattatcccttaccaaatgag 47864645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 618
Target Start/End: Complemental strand, 50381812 - 50381722
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgagt 618  Q
    ||||||||||||||||||||||||| || ||||| | ||||| || |||| ||| || || |||||||||||||||||||| ||| |||||    
T  50381812 agaaattcaccttaaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatatattgtgcattatcccttaccaaatgagt 50381722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 33528202 - 33528291
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || ||||||| || || || ||||| || || |||| |||||||||||||||||| ||| ||||    
T  33528202 agaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatcccttaccaaatgag 33528291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 22602200 - 22602289
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || | ||||| ||||| || || |  || |||||||||||||||||||| ||||| ||| ||||    
T  22602200 agaaattcaccttaaagatgaataagtgcgatgtctgggattcgaacctcgtcccctacacatattgtgcattattccttaccaaatgag 22602289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 618
Target Start/End: Complemental strand, 27471620 - 27471512
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    ||||||| | ||| ||| ||||||| ||||||||||||||||| || ||||| | || || || |||||||| ||  ||||||| ||||||||||||||     
T  27471620 aagtagtctagtggctagagaaatttaccttaaagatgaataagtggggtgtccggggttcgaaccccaacccctgtacatattatgcattatcccttac 27471521  T
Q  610 caattgagt 618  Q
    ||| |||||    
T  27471520 caaatgagt 27471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 27817065 - 27817153
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||| |||||||||||||||||| |||||| || || || | ||  || || |||| |||||||||||||||||| ||| ||||    
T  27817065 agaaattcaacttaaagatgaataaatggggtgtccgggttcgaactccggcccctgcacaaattgtgcattatcccttaccaaatgag 27817153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 566
Target Start/End: Complemental strand, 166890 - 166849
Alignment:
Q  525 ctaaagaaattcaccttaaagatgaataaatgaggtgtctgg 566  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  166890 ctaaagaaattcactttaaaggtgaataagtgaggtgtctgg 166849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 1325310 - 1325355
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatg 556  Q
    ||||||| | ||| ||||||||||||| ||||||||||||||||||    
T  1325310 aagtagtctagtggctaaagaaattcatcttaaagatgaataaatg 1325355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 9320956 - 9321045
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||| ||| ||||||||||| || |||||  || ||| || |||||||| || |||| ||||| |||||||||||||||| ||||    
T  9320956 agaaattcatctttaagatgaataagtggggtgttcgggtttcgaaccccaacccctgcacaaattgtacattatcccttatcaaatgag 9321045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 553
Target Start/End: Complemental strand, 9738458 - 9738430
Alignment:
Q  525 ctaaagaaattcaccttaaagatgaataa 553  Q
    |||||||||||||||||||||||||||||    
T  9738458 ctaaagaaattcaccttaaagatgaataa 9738430  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 29645806 - 29645858
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    ||||||| | ||| ||| ||||||||||||||||||||||||| || ||||||    
T  29645806 aagtagtctagtggctagagaaattcaccttaaagatgaataagtggggtgtc 29645858  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 511 - 603
Target Start/End: Original strand, 44062021 - 44062113
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatc 603  Q
    ||||||| | ||| ||| ||| ||||||||||||||||||||| || |||||| || || || | ||  || || ||||||||||||||||||    
T  44062021 aagtagtctagtggctagagacattcaccttaaagatgaataagtggggtgtcggggttcgaactccggcccctgcacatattgtgcattatc 44062113  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 511 - 608
Target Start/End: Original strand, 930917 - 931015
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctg-gatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||| || | |||||| | || || |||||||| || ||||||||||||||| |||||||    
T  930917 aagtagtttagtgactagagaaattcacctttaagatgaataagtgggatgtctgaggttcgaaccccaacccctgcacatattgtgcattgtccctta 931015  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 566
Target Start/End: Original strand, 15470600 - 15470655
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctgg 566  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||    
T  15470600 aagtagtttagtggctagagaaattcaccttaaagatgaataaatggggtgtctgg 15470655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 563
Target Start/End: Complemental strand, 42209022 - 42208980
Alignment:
Q  521 gtgactaaagaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  42209022 gtgactagagaaattcaccttaaagatgaataagtgaggtgtc 42208980  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 4395848 - 4395882
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    |||||||||||||||||||||||||||| ||||||    
T  4395848 agaaattcaccttaaagatgaataaatggggtgtc 4395882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 15696250 - 15696216
Alignment:
Q  583 ctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||||||||||||||||||||||| ||||    
T  15696250 ctacacatattgtgcattatcccttatcaaatgag 15696216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 608
Target Start/End: Complemental strand, 26671699 - 26671601
Alignment:
Q  511 aagtagtttggtgactaaagaaattcacctta-aagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||| | ||| ||| |||||||||||||  ||||||||||| || |||||||||||| ||  | || || || |||| ||||||||||||||||||    
T  26671699 aagtagtctagtggctagagaaattcaccttttaagatgaataagtggggtgtctggattcgaaactcagcccctgcacaaattgtgcattatccctta 26671601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 608
Target Start/End: Complemental strand, 26943296 - 26943198
Alignment:
Q  511 aagtagtttggtgactaaagaaattcacctta-aagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||| | ||| ||| |||||||||||||  ||||||||||| || |||||||||||| ||  | || || || |||| ||||||||||||||||||    
T  26943296 aagtagtctagtggctagagaaattcaccttttaagatgaataagtggggtgtctggattcgaaactcagcccctgcacaaattgtgcattatccctta 26943198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 556
Target Start/End: Complemental strand, 3294187 - 3294154
Alignment:
Q  523 gactaaagaaattcaccttaaagatgaataaatg 556  Q
    ||||| ||||||||||||||||||||||||||||    
T  3294187 gactatagaaattcaccttaaagatgaataaatg 3294154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 563
Target Start/End: Original strand, 27691277 - 27691309
Alignment:
Q  531 aaattcaccttaaagatgaataaatgaggtgtc 563  Q
    |||||||||||||||||| ||||||||||||||    
T  27691277 aaattcaccttaaagatggataaatgaggtgtc 27691309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 34729569 - 34729481
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||| ||||||| || |||||| || || || |||| ||| || || ||| | |||||||||||||| ||| ||||    
T  34729569 agaaattcaccttaaaggtgaataagtggggtgtccgggttcgaaccccgacccctgcatataatatgcattatcccttaccaagtgag 34729481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 1032668 - 1032579
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| || ||||||| || || || ||||| || || ||||||||||||||||||||||| ||| ||||    
T  1032668 agaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgag 1032579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 38289214 - 38289321
Alignment:
Q  511 aagtagtttggtgactaaagaaattcaccttaaagatgaataaatgaggtgtctg-gatttgagccccaacctctacacatattgtgcattatcccttat 609  Q
    |||||| || ||| ||| ||||||||||||||||||||||||| || ||||| || | || || |||| ||| || |||||||||||||||||||||||     
T  38289214 aagtagcttagtggctagagaaattcaccttaaagatgaataagtggggtgtttgaggttcgaaccccgacccctgcacatattgtgcattatcccttac 38289313  T
Q  610 caattgag 617  Q
    ||| ||||    
T  38289314 caaatgag 38289321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 617
Target Start/End: Original strand, 41845422 - 41845515
Alignment:
Q  525 ctaaagaaattcaccttaaagatgaataaatgaggtg-tctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||||||||||||||||||||||||  |||| || || || || |||| | | || ||||||||||||||||||||||| ||| ||||    
T  41845422 ctaaagaaattcaccttaaagatgaataaatagggtgttcggggttcgaaccccgatccctgcacatattgtgcattatcccttaccaaatgag 41845515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 43413883 - 43413963
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    ||||||||||||||||||||||||| || ||||| | ||||| || ||||| || || |||| ||||||||||||||||||    
T  43413883 agaaattcaccttaaagatgaataagtggggtgtttgggattcgaaccccagcccctgcacaaattgtgcattatccctta 43413963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 19733066 - 19733155
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtg-tctggatttgagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    ||||||||||||||||||||||||| | ||||| || ||||| || |||| ||| || || ||||| |||||||||||||| ||| ||||    
T  19733066 agaaattcaccttaaagatgaataatttaggtgttcgggattcgaaccccgacccctgcatatattatgcattatcccttaccaaatgag 19733155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 605
Target Start/End: Original strand, 33820392 - 33820469
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtct-ggatttgagccccaacctctacacatattgtgcattatccc 605  Q
    ||||||||||||| ||||||||||| || ||||||| ||||| || |||| |||||| |||| |||||| ||||||||    
T  33820392 agaaattcacctttaagatgaataattggggtgtctgggattcgaaccccgacctctgcacaaattgtgtattatccc 33820469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 11690947 - 11690985
Alignment:
Q  525 ctaaagaaattcaccttaaagatgaataaatgaggtgtc 563  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  11690947 ctaaagaaattcaccttaaaggtgaataaatggggtgtc 11690985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 617
Target Start/End: Original strand, 44828425 - 44828519
Alignment:
Q  525 ctaaagaaattcaccttaaa-gatgaataaatgaggtgtctggattt-gagccccaacctctacacatattgtgcattatcccttatcaattgag 617  Q
    |||||||||||||||||||| ||||||||| || |||||||||  || || |||||  | || |||| |||||||||||||||||| ||| ||||    
T  44828425 ctaaagaaattcaccttaaaagatgaataagtgtggtgtctggggttcgaaccccagaccctgcacaaattgtgcattatcccttaccaaatgag 44828519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 605
Target Start/End: Original strand, 3728225 - 3728302
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctg-gatttgagccccaacctctacacatattgtgcattatccc 605  Q
    ||||||||||||||||| ||||||| ||||||||| | ||||||| || | |||||  || ||||| |||||||||||    
T  3728225 agaaattcaccttaaaggtgaataagtgaggtgtccgagatttgaacctcgacctccgcatatattatgcattatccc 3728302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 38064075 - 38064038
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctgg 566  Q
    ||||||||||||||||||||||||| || |||||||||    
T  38064075 agaaattcaccttaaagatgaataagtggggtgtctgg 38064038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 608
Target Start/End: Complemental strand, 10201360 - 10201280
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgt-ctggatttgagccccaacctctacacatattgtgcattatccctta 608  Q
    |||||||||| |||||| |||||||||||||||| | || || || |||| ||| ||||| ||||| ||||||||| ||||    
T  10201360 agaaattcactttaaaggtgaataaatgaggtgtccggggttcgaaccccgacccctacatatattatgcattatctctta 10201280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 565
Target Start/End: Original strand, 17730 - 17766
Alignment:
Q  529 agaaattcaccttaaagatgaataaatgaggtgtctg 565  Q
    |||||||||||||||| |||||||| |||||||||||    
T  17730 agaaattcaccttaaaaatgaataagtgaggtgtctg 17766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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