View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_high_11 (Length: 376)
Name: NF16410_high_11
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 21 - 367
Target Start/End: Complemental strand, 24871359 - 24871013
Alignment:
| Q |
21 |
tcctagtcctttcatccacacaaaatatggtgagggtcacttttctttcattttcactcacaatcacagcctagcttgaaagaaactagtgatatttgtc |
120 |
Q |
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| T |
24871359 |
tcctagtcctttcatccacacaaaatatggtgagggtcacttctctttcattttcactcacaatcacagcctagcttgaaagaaactagtgatatttgtc |
24871260 |
T |
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| Q |
121 |
acatttagggtacccttgtgaggattaaaagaggaaattgtaagaaaactaacaaaccaagtacaaattacacactataacaagtgtgattctatctata |
220 |
Q |
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| T |
24871259 |
acttttagggtacccttgtgaggattaaaagaggaaattgtaagaaaactaacaaaccaagtacaaattacacactataacaagtgcgattctatctata |
24871160 |
T |
|
| Q |
221 |
gttaataagaaatgacaataacacttcacctaccttttttgtgagtgatgaataaaatatctgcacatgtttgctatgttgaacttaagtcggtagaata |
320 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24871159 |
gttaatatgaaatgacaataacacttcacctacctattttgtgagtgatgaataaaatatctgcacaagtttgctatgttgaacttaagtcggtagaata |
24871060 |
T |
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| Q |
321 |
tgaataatggctgattgtggttaattagttgagttttgttagtatta |
367 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24871059 |
tgaataatggctgattgtggtgaattagttgagttttgttagtatta |
24871013 |
T |
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