View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_high_12 (Length: 353)
Name: NF16410_high_12
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_high_12 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 16782119 - 16782457
Alignment:
| Q |
1 |
tgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16782119 |
tgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgtagtttttctgca |
16782218 |
T |
|
| Q |
101 |
acttgtgaatattggttgctatagnnnnnnnn-tatcagtacatgacagtgaggaaaactacatgacagtgggnnnnnnncaagatcatgtccattcatt |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16782219 |
acttgtgaatattggttgctatagaaaaaaaaatatcagtacatgacagtgaggaaaactacatgacagtgggaaaaaaacaagatcatgtccattcatt |
16782318 |
T |
|
| Q |
200 |
tgctcagtgcctagaaaaattgtcctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattccaaaaactagcataa |
299 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16782319 |
tgctcagtgcctagaaaaattgttctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattccaaaaactagcataa |
16782418 |
T |
|
| Q |
300 |
taaaaggtgagagtgctcaaacacatttatacatatatg |
338 |
Q |
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| T |
16782419 |
taaaaggtgagagtgctcaaacacatttatacatatatg |
16782457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 16839645 - 16839760
Alignment:
| Q |
185 |
tcatgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattc |
284 |
Q |
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|||||||| || |||| |||||||| ||| || ||||| ||| ||||||||| |||| |||| |||| ||||| ||||||| ||| |||||| ||||| |
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| T |
16839645 |
tcatgtccgtttatttactcagtgcttaggaatattgttgtctgtcaaaggtagggctcaattattgagaataattgttaaatggagaagaatctcattc |
16839744 |
T |
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| Q |
285 |
caaaaa-ctagcataa |
299 |
Q |
| |
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|||||| ||||||||| |
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| T |
16839745 |
caaaaatctagcataa |
16839760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 9521 - 9644
Alignment:
| Q |
1 |
tgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgca |
100 |
Q |
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||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
9521 |
tgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgca |
9620 |
T |
|
| Q |
101 |
acttgtgaatattggttgctatag |
124 |
Q |
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|| ||| || ||||| |||||||| |
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| T |
9621 |
acatgtcaaaattggctgctatag |
9644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13869 - 13965
Alignment:
| Q |
1 |
tgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttct |
97 |
Q |
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||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
13869 |
tgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttct |
13965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 38938502 - 38938331
Alignment:
| Q |
2 |
gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgcaa |
101 |
Q |
| |
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|||| |||| |||||| ||||||||||||||||||||||||| || ||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |
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| T |
38938502 |
gtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgcaa |
38938404 |
T |
|
| Q |
102 |
cttgtgaatattggttgc--tatagnnnnnnnntatcagtacatgacagtgaggaaaactacatgacagtggg |
172 |
Q |
| |
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||||| |||||||| ||| || || |||||||||||||||||| |||||||||||||| ||||| |
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| T |
38938403 |
cttgtcaatattggctgctgtagagagaaaaaaaatcagtacatgacagtgacgaaaactacatgactgtggg |
38938331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 38938277 - 38938237
Alignment:
| Q |
249 |
ttgataataactgttaaacgg-actagaatcacattccaaa |
288 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||| |
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| T |
38938277 |
ttgataataattgttaaacgggactagaatcacattccaaa |
38938237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 10169 - 10264
Alignment:
| Q |
29 |
ggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgcaacttgtgaatattggttgctatag |
124 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| ||| || |||| |||||||| |
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| T |
10169 |
ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatag |
10264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 11983167 - 11983113
Alignment:
| Q |
2 |
gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgt |
56 |
Q |
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|||| |||| ||||||||||||||||| |||||||||||||| ||| |||||||| |
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| T |
11983167 |
gtttggattggagatgactttgctctatgaagatgaaatatgcgttattatttgt |
11983113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 11982865 - 11982816
Alignment:
| Q |
184 |
atcatgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaa |
233 |
Q |
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||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
11982865 |
atcatgtccattcatttgctcagtgagcagaaacattgttctctttcaaa |
11982816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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