View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16410_high_14 (Length: 336)
Name: NF16410_high_14
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_high_14 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4785058 - 4785382
Alignment:
| Q |
1 |
ccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4785058 |
ccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtatggtaattgaagatatggtggacccgt |
4785157 |
T |
|
| Q |
101 |
tcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtga |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
4785158 |
tcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacgaatgtcgatgagtga |
4785257 |
T |
|
| Q |
201 |
tgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtaagcaaaggata |
300 |
Q |
| |
|
||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4785258 |
tgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtgagcaaaggata |
4785357 |
T |
|
| Q |
301 |
gaattggcacattttactgatgatg |
325 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
4785358 |
gaattgtcacattttactgatgatg |
4785382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4817487 - 4817811
Alignment:
| Q |
1 |
ccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4817487 |
ccgttggttcggtctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtatggtaattgaagatatggtggacccgt |
4817586 |
T |
|
| Q |
101 |
tcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtga |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
4817587 |
tcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacgaatgtcgatgagtga |
4817686 |
T |
|
| Q |
201 |
tgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtaagcaaaggata |
300 |
Q |
| |
|
||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4817687 |
tgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtgagcaaaggata |
4817786 |
T |
|
| Q |
301 |
gaattggcacattttactgatgatg |
325 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
4817787 |
gaattgtcacattttactgatgatg |
4817811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 4862779 - 4862525
Alignment:
| Q |
4 |
ttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgttca |
103 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||| | ||||||||||||| |||||||||||||||||| |||||||||| ||||| || ||||||| |
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|
| T |
4862779 |
ttggttcgttcttctgaaaagaaaaaagcgagtttagtcgtttggtttcaaaaatgttacaatgaaggtgtcataattgaagagatggtagatccgttca |
4862680 |
T |
|
| Q |
104 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4862679 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
4862580 |
T |
|
| Q |
204 |
tgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4862579 |
tgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaag |
4862525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 4698416 - 4698670
Alignment:
| Q |
4 |
ttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgttca |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| | ||||||| |||| ||||||||||||||||||| | || ||||| |||||||||||||||| |
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|
| T |
4698416 |
ttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttccaaagatgttacaatgaaggtgtgatcatcgaagagatggtggacccgttca |
4698515 |
T |
|
| Q |
104 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
203 |
Q |
| |
|
|||| ||||||||||| ||| ||| | ||| ||||||| |||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||| |
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|
| T |
4698516 |
taaaggattctataacggctgaatgtctaaaaagttattgccaaatggtgttgagttgtttgcatgatgatggaaatcaacggatgtcgatgagtgatgt |
4698615 |
T |
|
| Q |
204 |
tgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
4698616 |
tgttggagctttagagtttgcattgcagttggagataagtgaggaggatactaag |
4698670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 57 - 258
Target Start/End: Original strand, 4713345 - 4713546
Alignment:
| Q |
57 |
atgttacaatgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtttta |
156 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
4713345 |
atgttacaatgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttg |
4713444 |
T |
|
| Q |
157 |
agttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagta |
256 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||| ||| | |||| ||||||| ||||||| ||| |
|
|
| T |
4713445 |
agttgtttgcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggta |
4713544 |
T |
|
| Q |
257 |
ag |
258 |
Q |
| |
|
|| |
|
|
| T |
4713545 |
ag |
4713546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 57 - 258
Target Start/End: Original strand, 4854715 - 4854916
Alignment:
| Q |
57 |
atgttacaatgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtttta |
156 |
Q |
| |
|
||||||||||||||| ||| || ||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
4854715 |
atgttacaatgaaggagtgatagttgaagagatggtggacccattcataaaggactctataacaagtgagtgtttgaaattttattgtcaaatggtgttg |
4854814 |
T |
|
| Q |
157 |
agttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagta |
256 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| |||||||| |||| ||| | |||| ||||||| |||| |||||| |
|
|
| T |
4854815 |
agttgtttgcatggtgatggaaatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggagaatagta |
4854914 |
T |
|
| Q |
257 |
ag |
258 |
Q |
| |
|
|| |
|
|
| T |
4854915 |
ag |
4854916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 4642444 - 4642350
Alignment:
| Q |
154 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
248 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| |||| | |||||||||| |
|
|
| T |
4642444 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattggtggtgagtgagga |
4642350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 4665784 - 4665594
Alignment:
| Q |
45 |
ttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgt |
144 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||| ||||||| | || || || || ||| ||| |||||||| ||| ||||| ||||||| |||||| |
|
|
| T |
4665784 |
ttggtttaaaaaatgttacgatgaaggtgtggcaattgaacaaatagttgatccattcgtaagggattctatcacagatgagtacttgaaatattattgc |
4665685 |
T |
|
| Q |
145 |
caaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttgg |
235 |
Q |
| |
|
| ||| |||||||| |||||||| ||||| | ||||||| ||||||||| | || ||||| | |||||||||||||||||| |||| |
|
|
| T |
4665684 |
aagttggcgttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattgg |
4665594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 4629799 - 4629568
Alignment:
| Q |
4 |
ttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgttca |
103 |
Q |
| |
|
||||||||| |||||||||||| | ||| ||| | | | ||||||||||| ||| | ||||||||||||| |||||| | || || || || ||| |
|
|
| T |
4629799 |
ttggttcgtgatttggataagaatacagctagtctagtttgttggtttcaaaaatgccataatgaaggtgtggcgattgaacaaatagtcgatccattct |
4629700 |
T |
|
| Q |
104 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
203 |
Q |
| |
|
||| |||||||| ||| |||||| ||||||| |||||| | ||| |||||||| |||||||| ||||| | ||||||| ||||||||| | || |
|
|
| T |
4629699 |
taagggattctatcacagttgagtgcttgaaatattattgcaagttggcgttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagt |
4629600 |
T |
|
| Q |
204 |
tgttggagctttagagtttgcattgcagttgg |
235 |
Q |
| |
|
||||| | |||||||||||||||||| |||| |
|
|
| T |
4629599 |
ggttgggggtttagagtttgcattgcaattgg |
4629568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 4635597 - 4635503
Alignment:
| Q |
154 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
248 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| || | | |||||||||| |
|
|
| T |
4635597 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattagtggtgagtgagga |
4635503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 247
Target Start/End: Complemental strand, 4660630 - 4660448
Alignment:
| Q |
65 |
atgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
164 |
Q |
| |
|
|||||||||||| |||||| | || ||||| || | | ||||||||||||| || |||||||||| ||| |||||| | ||| ||||||||||| |
|
|
| T |
4660630 |
atgaaggtgtggcgattgaacaaatagtggatccatccctaaaagattctatcacggatgagtgtttggaatattattgcaagttggcgttaagttgttt |
4660531 |
T |
|
| Q |
165 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagg |
247 |
Q |
| |
|
|||||| ||||| | ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | ||||||||| |
|
|
| T |
4660530 |
gcatgatgatgggactcaacgaccttcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgagg |
4660448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 4671377 - 4671280
Alignment:
| Q |
157 |
agttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatag |
254 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | |||||||||| ||||| |
|
|
| T |
4671377 |
agttgcttgcatgatgatggaactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgaggaagatag |
4671280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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