View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16410_high_19 (Length: 226)
Name: NF16410_high_19
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 39228229 - 39228421
Alignment:
| Q |
17 |
caaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39228229 |
caaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
39228328 |
T |
|
| Q |
117 |
acataggaagtgatgatgatgaagaaacagaaacagaaagagtaagaaagagggtatataatacaaaggtgaaactaggattatccattattt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
39228329 |
acataggaagtgatgatgatgaagaaacagaaacagaaagagtaagaaagagggtatatagtacaaaggtgaaactaggagtatccattattt |
39228421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 25547428 - 25547623
Alignment:
| Q |
17 |
caaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25547428 |
caaagggacatgtagttggagatattccaactctttaaagaagttttggattcaaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaag |
25547527 |
T |
|
| Q |
117 |
acataggaagtgatgatgat---gaagaaacagaaacagaaagagtaagaaagagggtatataatacaaaggtgaaactaggattatccattattt |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||| |
|
|
| T |
25547528 |
acataggaagtgatgatgatgaagaagaaacaaaaacagaaagagtaagaaagagggtatagagtacaaaggtgaaactaggagtattcattattt |
25547623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University