View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_high_4 (Length: 618)
Name: NF16410_high_4
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 42 - 343
Target Start/End: Original strand, 34015695 - 34015998
Alignment:
| Q |
42 |
catttgtgtacggagtctagatcataagtaggtagtgttcttggcttttttccagttttgtactagccattttttatcccttcgtcattttcacatttga |
141 |
Q |
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| T |
34015695 |
catttgtgtaaggactctagatcatatgtatgtagtgt-cttggattttctccaattttgcattagccattttcgatcccttcgtcattttcaaatttga |
34015793 |
T |
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| Q |
142 |
aatcactcctttctcattgcgagattcatttgtgccttcatcgaatcttgctaagtaatcgtgttcacctacataagaaacctcaggggtacatttagaa |
241 |
Q |
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| T |
34015794 |
aatcactcctttctcattgcgagtttcatttgtgccttcatcgaatcttgctaagtaatcatcttcacctacaaaagaaaccttaggggtacatttagaa |
34015893 |
T |
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| Q |
242 |
tgtttgtggggtattgggcctaaataatcgaactcaggtggcccatttgtactttgaccca-tgatc--caaaagcattttcctggcccaagctttataa |
338 |
Q |
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| T |
34015894 |
tgtttgtggggtattgggcctaaataatcgaaccaagatggccaatttttagtttgacccattgatccacaacagcattttcctgccccaagctatatga |
34015993 |
T |
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| Q |
339 |
actgc |
343 |
Q |
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| T |
34015994 |
actgc |
34015998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 459 - 545
Target Start/End: Original strand, 34017950 - 34018036
Alignment:
| Q |
459 |
atgacgtggtgatatgggttatg-tgtggaggagatttttctagttaacttgacttaatcaaatgtatccgttattttatgcatatcc |
545 |
Q |
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| T |
34017950 |
atgacgtggtgatattggttatgatgtggaagagatttctctagttaacttgacttaatc-aatatatccgttattttatgcatatcc |
34018036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 443
Target Start/End: Original strand, 34017808 - 34017840
Alignment:
| Q |
411 |
atcactggattttagatgcatgtgtaaaatgtg |
443 |
Q |
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| T |
34017808 |
atcactggattttagatgcatgtgcaaaatgtg |
34017840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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