View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_high_5 (Length: 614)
Name: NF16410_high_5
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Original strand, 43094612 - 43095176
Alignment:
| Q |
19 |
agtataccaatgcaaatcttgctggtagattgatggctcgttaatgtattacatatgtttttcctcaatttatcaactatatatcaagagacatgataaa |
118 |
Q |
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| T |
43094612 |
agtataccaatgcaaatcttgttggtagattgatggctcgttaatgtattacatatgtttttcctcaatttatcaactatatatcaagagacatgataaa |
43094711 |
T |
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| Q |
119 |
agaaggtggagccattgatagaggaagggtggggcaggaacaagactgtgtcatgatatcttatccaccccgctgttagcaaaaacacatgcaaaagtca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43094712 |
agaaggtggagccattgatagaggaagggtggggcaggaacaagactgtgtcatgatatcttatccaccccgctgttagcaaaa------------gtca |
43094799 |
T |
|
| Q |
219 |
attccccacaactgtgtttagacagctctataggatttattacaattctctatttaaatacctactattgctaactgtgttttattctatcaaatcaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43094800 |
attccccacaactgtgtttagacagctctataggatttatcacaattctctatttaaatacctactattgctaactgtgttttattctatcacatcaaaa |
43094899 |
T |
|
| Q |
319 |
attgatttcgtaaaattgattttaattagaagtgactttatgttacaatatt------ttatgcaatgtgaaactcgaacaataaatttaaattttgaaa |
412 |
Q |
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|||||||| || |||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||| |
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| T |
43094900 |
attgattt--------------tagttagaagtgactttatgttacaatgttaatgttttatgtaatgtgaaacttgaacaataaatttaaatgttgaaa |
43094985 |
T |
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| Q |
413 |
tcaaatttgcagactaaattgcaatttctaacttctaacttagaattaattttaactcttcaaaatcacttttgactctactaaaattgaatccaaatac |
512 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43094986 |
tcaaatttgcagactaaattgaaatttctaacttctaacttagaattaattttaactcttcaaaatcacttttgactctactaaaattgaatccaaatat |
43095085 |
T |
|
| Q |
513 |
ctactatttaacaatataatccttagtctttacacacaacaaagaggcaataaagaaatcatctagctctcaagatatatatcacaggttc |
603 |
Q |
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| T |
43095086 |
ctactatttaacaatataatccttagtctttacgcacaataaagaggcaataaagaaatcatctagctctcaagatatatatcacaggttc |
43095176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 35728892 - 35728845
Alignment:
| Q |
460 |
aattttaactcttcaaaatcacttttgactctactaaaattgaatcca |
507 |
Q |
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|||||||| ||||||||||||||||||||||| | |||| |||||||| |
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| T |
35728892 |
aattttaattcttcaaaatcacttttgactcttccaaaagtgaatcca |
35728845 |
T |
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