View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_low_1 (Length: 738)
Name: NF16410_low_1
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 685; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 11 - 723
Target Start/End: Original strand, 26332034 - 26332746
Alignment:
| Q |
11 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctactagccgaggcacaataaccctcattttcattatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332034 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctactagccgaggcacaataaccctcattttcattatc |
26332133 |
T |
|
| Q |
111 |
acccttcctgcaacaaagaaaaatcacaattagttcgactaaattaaaatgcactacacaattccactctaaaatcatgaatggcgtattagaccttaaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |
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| T |
26332134 |
acccttcctgcaacaaagaaaaatcacaattagttcgactaaattaaaatgcactacacaattccactctaaaatcatgaatgacgtattaaataggaaa |
26332233 |
T |
|
| Q |
211 |
ttgctaatatcttaccatcttttcgcctctggtacaagggcattgtcatttcctccagaataactagtttgtgatgtttgttcaaattcttcttctccca |
310 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332234 |
ttgcttatatcttaccatcttttcgcctctggtacaagggcattgtcatttcctccagaataactagtttgtgatgtttgttcaaattcttcttctccca |
26332333 |
T |
|
| Q |
311 |
cagaagctgaagaatcttcttgtatggagacatgatccatcgcggattgatccgaaattccggagttagtgcatgatgaagtaggttgagagtttgttct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332334 |
cagaagctgaagaatcttcttgtatggagacatgatccatcgcggattgatccgaaattccggagttagtgcatgatgaagtaggttgagagtttgttct |
26332433 |
T |
|
| Q |
411 |
tctattagactgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatccaaatccctctcgactttcttcttcattgagcaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332434 |
tctattagactgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatccaaatccctctcgactttcttcttcattgagcaa |
26332533 |
T |
|
| Q |
511 |
tttggattcgtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatcttccgatctctttt |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332534 |
tttggattcgtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatcttccgatctctttt |
26332633 |
T |
|
| Q |
611 |
gttctctaacaaattgagatgcattattattgtagttataataaccagaaccagtaactgaattactatgtatttctggtttgattggtacaatttctga |
710 |
Q |
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| T |
26332634 |
gttctctaacaaattgagatgcattattattgtagttataataaccagaaccagtaactgaattactatgtatttctggtttgattggtacaatttctga |
26332733 |
T |
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| Q |
711 |
ggaatagctctga |
723 |
Q |
| |
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||||||||||||| |
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| T |
26332734 |
ggaatagctctga |
26332746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 520 - 584
Target Start/End: Original strand, 40471438 - 40471502
Alignment:
| Q |
520 |
gtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctcca |
584 |
Q |
| |
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||||||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
40471438 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctcca |
40471502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 419 - 599
Target Start/End: Complemental strand, 3669374 - 3669191
Alignment:
| Q |
419 |
actgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatc---caaatccctctcgactttcttcttcattgagcaatttgg |
515 |
Q |
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||||||||||||| ||||||||| |||| |||||||| |||| |||||| |||||||| |||| ||| || ||||||||||||||||||||| |||| |
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| T |
3669374 |
actgaggcttaggatggttatgacttcctttatatactatttgagtaatttgtccatcatccaaagacctttcaactttcttcttcattgagcaaattgg |
3669275 |
T |
|
| Q |
516 |
attcgtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatcttc |
599 |
Q |
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||| ||||||||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||| |
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| T |
3669274 |
attagtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatcttc |
3669191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 3669877 - 3669812
Alignment:
| Q |
11 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctac |
76 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
3669877 |
catcatcaagaatatcaatttcacttgtagtttgaaccacaactcttggttccttaacagttctac |
3669812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 423 - 605
Target Start/End: Original strand, 26966955 - 26967137
Alignment:
| Q |
423 |
aggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatccaaatccctctcgactttcttcttcattgagcaatttggattcgtg |
522 |
Q |
| |
|
||||||||| || |||||| | || || || || || |||||||| |||||||| ||| ||||||| ||||| ||||| ||| ||||| || | ||| |
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| T |
26966955 |
aggcttaggatgattatgactacctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtg |
26967054 |
T |
|
| Q |
523 |
cacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatcttccgatct |
605 |
Q |
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|| || |||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |
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| T |
26967055 |
catttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatct |
26967137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 26966210 - 26966261
Alignment:
| Q |
11 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttc |
62 |
Q |
| |
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||||||| || |||||||| |||||||| |||||||| |||||||||||||| |
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| T |
26966210 |
catcatctagaatatcaatgtcacttgttgtttgaacaacaactctaggttc |
26966261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 31614683 - 31614749
Alignment:
| Q |
11 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctact |
77 |
Q |
| |
|
||||||| ||||||||||| |||||||| || ||||||||||||||||||||| | ||||||||||| |
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| T |
31614683 |
catcatccaggatatcaatgtcacttgttgtctgaactacaactctaggttctctcacagttctact |
31614749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 596
Target Start/End: Original strand, 18876310 - 18876392
Alignment:
| Q |
514 |
ggattcgtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatc |
596 |
Q |
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|||| |||||||||||||||||| || ||| ||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| |
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| T |
18876310 |
ggatgcgtgcacttgtaataacttcgaggaaactcgctacctttcacctgtttctgtccgtatttcctccagttgtagccatc |
18876392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 605
Target Start/End: Original strand, 31615352 - 31615437
Alignment:
| Q |
520 |
gtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatcttccgatct |
605 |
Q |
| |
|
||||| ||||| ||||| | ||||||||| ||||| || ||||| || ||||||||||||| ||||||||| ||||| || ||||| |
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| T |
31615352 |
gtgcatttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatcatcggatct |
31615437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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