View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16410_low_13 (Length: 364)
Name: NF16410_low_13
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 47982935 - 47982591
Alignment:
| Q |
1 |
tgaaaactataatggtagagaaacatataaagaaacattaaatccattcaacaatgacagtaaacattacacaaactactgcaatttctactgtggagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47982935 |
tgaaaactataatggtagagaaacatataaagaaacattaaatccattcaacaatgacagtaaacattacacaaactactgcaatttctactgtggagaa |
47982836 |
T |
|
| Q |
101 |
tttgtttagagtctaaaattgaaatgagtaaaaccacattgtatttcaataagttaagttttcttataatcaaatatataaaatcaacatagcttttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47982835 |
tttgtttagagtctaaaattgaaatgagtaaaaccacattgtatttcaataagttaagttttcttataatcaaatatataaaatcaacatagcttttttg |
47982736 |
T |
|
| Q |
201 |
gaattatttaaatcttcatatgcctgtaaaaggtaaaaataatgaactcagatacaccatacaatgactctcctccataagattgtgtgcagcgcagtag |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47982735 |
gaattatttaaatcttcatatgcctgtaaaaggtaaaaataatgaactcagatacaccatacaatgactctcctccaacagattgtgtgcagcgcagtag |
47982636 |
T |
|
| Q |
301 |
aggatttgatatatccaaaaatagtagcttaacttgcgttgacat |
345 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47982635 |
aggatttgatatatccaaaaatagtaggttaacttgcgttgacat |
47982591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 47992684 - 47992625
Alignment:
| Q |
110 |
agtctaaaattgaaatgagtaaaaccaca--ttgtatttcaataagttaagttttcttat |
167 |
Q |
| |
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||||||||||||||||||| |||| ||| |||||||| |||||| ||||||||||||| |
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| T |
47992684 |
agtctaaaattgaaatgagaaaaaaaacaaattgtatttaaataagataagttttcttat |
47992625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 38355811 - 38355471
Alignment:
| Q |
1 |
tgaaaactataatggtagagaaacatataaagaaacattaaatccattcaacaatgacagtaaacattacacaaactactgcaatttctactgtggagaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||| |||||| |
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| T |
38355811 |
tgaaaactataatgacagagaaacatataaa--aacattaaattcattcaacaatgacagtaaacattacgcaaagtacttcaatttctactaaggagaa |
38355714 |
T |
|
| Q |
101 |
tttgtttagagtctaaaattgaaatgagtaaaaccacattgtatttcaataagttaagttttcttataatcaaatatataaaatcaacatagcttttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38355713 |
tttgtttagagtctaaaattgaaatgagtaaaaccacattgtatttcaataagt-aagttttcttataatcaaatatataaaatcaacatagctttttta |
38355615 |
T |
|
| Q |
201 |
gaattatttaaatcttcatatgcctgtaaaaggtaaaaataatgaactcagatacaccatacaatgactctcctccataagattgtgtgcagcgcagtag |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||| ||||| ||| |||||||| ||||||| |
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|
| T |
38355614 |
gaattatttaaatcttcatatgactgtaaagggtaaaaataatgaactcagatacaccatacaat-attctactccaacagactgtgtgcaaagcagtag |
38355516 |
T |
|
| Q |
301 |
aggatttgatatatccaaaaatagtagcttaacttgcgttgacat |
345 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
38355515 |
aggatttgatatatccaaaaatagtagctcaacttgcgtcgacat |
38355471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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