View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16410_low_18 (Length: 306)
Name: NF16410_low_18
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 40908677 - 40908952
Alignment:
| Q |
19 |
aaacataacataaattagtttatttagcacactctaacaaactacaaatgattcatgatgaattctgtctagctagatctttcctatggctaacaacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
40908677 |
aaacataacataaattagtttatttagcgcacactaacaaactacaaatgattcatgatgaattctgtcttgatagatctttcctatggctaacagcatg |
40908776 |
T |
|
| Q |
119 |
ctaccactctcaatagggctcaagggacttgggcgtagtatttgtatatactatcaagtatttttagcataacatccctccactgcaatagacttcaaca |
218 |
Q |
| |
|
| ||||| ||||||||||||| ||||||||| |||| |||||| |||| |||||||||||||| ||||||| || || || |||||||| ||| |||| |
|
|
| T |
40908777 |
cgaccacactcaatagggctcgggggacttggtcgtaatatttggatattctatcaagtattttgagcataatttctctgcattgcaataggctttaaca |
40908876 |
T |
|
| Q |
219 |
ggaatcaaactcaattttgaatccttaaccatgtgtaccaattttacagcatcattatacacactcaatgcatatt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40908877 |
ggaatcaaactcaattttgaatccttaaccatgtgtatcaattttacagcatcattatacacactcaatgcatatt |
40908952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University