View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_low_19 (Length: 306)
Name: NF16410_low_19
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 42592764 - 42592625
Alignment:
| Q |
165 |
cagtgtctccgaccttcaagaaaattgaagaaaagtaaagaaaaaatagtttctccaccattgtccatttcgttacgatcaccagacttactctcagaaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||| |
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| T |
42592764 |
cagtgtctccgaccttcaagaaaattgaagaaaagaaaagaaaaaatagtttctccatcgttgtccattccgttacgatcaccggacttactctcagaaa |
42592665 |
T |
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| Q |
265 |
agaaatagagtgcaatatatatttgtccttttgatctctg |
304 |
Q |
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| T |
42592664 |
agaaatacagtgcaatatatatttgtccttttgatctctg |
42592625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42592927 - 42592827
Alignment:
| Q |
1 |
cttcttttcattctgctcattttcatcttctttgtctccatgcagtatgtcaacttcgatataatccccaaccaagtatccttattgattttgataaact |
100 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
42592927 |
cttcttttcattctgctcattttcatctgcttcgtctccatgcagtatgtcaacttcgaaataatccccagccaagtatccttattgattttgataaact |
42592828 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| |
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| T |
42592827 |
t |
42592827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 165 - 304
Target Start/End: Original strand, 45894812 - 45894951
Alignment:
| Q |
165 |
cagtgtctccgaccttcaagaaaattgaagaaaagtaaagaaaaaatagtttctccaccattgtccatttcgttacgatcaccagacttactctcagaaa |
264 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||| |
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| T |
45894812 |
cagtgtcttcgaccttcaagaaaattgaagaaaagaaaagaaaaaatagtttctccatcgttgtccattccgttacgatcaccggacttactctcagaaa |
45894911 |
T |
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| Q |
265 |
agaaatagagtgcaatatatatttgtccttttgatctctg |
304 |
Q |
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| T |
45894912 |
agaaatacagtgcaatatatatttgtccttttgatctctg |
45894951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45894649 - 45894749
Alignment:
| Q |
1 |
cttcttttcattctgctcattttcatcttctttgtctccatgcagtatgtcaacttcgatataatccccaaccaagtatccttattgattttgataaact |
100 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45894649 |
cttcttttcattctgctcattttcatctgcttcgtctccatgcagtatgtcaacttcgatataatccccagccaagtatccttattgattttgataaact |
45894748 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| T |
45894749 |
t |
45894749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 46177405 - 46177310
Alignment:
| Q |
6 |
tttcattctgctcattttcatcttctttgtctccatgcagtatgtcaacttcgatataatccccaaccaagtatccttattgattttgataaactt |
101 |
Q |
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||||||||||||||||||| ||| ||| | || | ||||||||| ||| |||||||||||| |||||||||||| || |||||||||||||| |
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| T |
46177405 |
tttcattctgctcattttcgtctgcttcttttctacctagtatgtcatctttgatataatcccctgccaagtatccttcttaattttgataaactt |
46177310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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