View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16410_low_2 (Length: 730)

Name: NF16410_low_2
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16410_low_2
NF16410_low_2
[»] chr6 (12 HSPs)
chr6 (255-712)||(16875234-16875689)
chr6 (19-238)||(16572745-16572964)
chr6 (13-238)||(16874621-16874845)
chr6 (13-233)||(16580760-16580980)
chr6 (13-233)||(16614400-16614620)
chr6 (431-582)||(16581475-16581626)
chr6 (431-582)||(16613754-16613905)
chr6 (634-712)||(16783164-16783242)
chr6 (255-320)||(16581385-16581450)
chr6 (255-320)||(16613930-16613995)
chr6 (487-547)||(16573652-16573712)
chr6 (256-325)||(16976916-16976983)
[»] chr3 (1 HSPs)
chr3 (548-712)||(38942055-38942219)
[»] chr2 (2 HSPs)
chr2 (29-177)||(233279-233427)
chr2 (13-238)||(21629507-21629732)
[»] chr1 (1 HSPs)
chr1 (29-177)||(7392068-7392216)
[»] chr7 (1 HSPs)
chr7 (29-167)||(48298405-48298543)
[»] scaffold0256 (1 HSPs)
scaffold0256 (44-142)||(10841-10939)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 255 - 712
Target Start/End: Original strand, 16875234 - 16875689
Alignment:
Q  255 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagttacttataattatacagtgtcacacaagttc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||   ||||||||||||||||||||     
T  16875234 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagttgcttat---tatacagtgtcacacaagttt 16875330  T
Q  355 accgct-aagatgttgatcaacaatagtagagctctcattctgtctttctactaagttgatctccaatagcaatgctcttgcttatgaaacttgattgga 453  Q
    ||| || ||||  |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16875331 accacttaagagattgatcaataataggagagctctcattctgtatttctactaagttgatctccaatagcaatgcccttgcttatgaaacttgattgga 16875430  T
Q  454 attaaagatctttatggagctgtatataaactaaagaggaaatttaactgttgtgaacgtcttgtgttaaaatttgattgcagttaaaactgaaatacaa 553  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||    
T  16875431 attaaagatctttatgaagctgtatataaactaaagatgaaatttaactgttgtgaccgtcttgtgttatggtttgattgcagttaaaactgaaatacaa 16875530  T
Q  554 cgaaacaatcaattgcctgaaacagtaaattactcattatttgaaatgagtgtgaaaattgcatattattatcattctggtctatgtgattttgtgtgta 653  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||    
T  16875531 cgaaacaatcaattgcctgaaacaataaattactcattatttgaaatgagtgtgtaacttgcatagtattatcattctggtctatgtgattttgtgtgta 16875630  T
Q  654 atataatgcaagctgatcctatattttgtgataacttgttgaaaagattacagccacac 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16875631 atataatgcaagctgatcctatattttgtgataacttgttgaaaagagtacagccacac 16875689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 16572745 - 16572964
Alignment:
Q  19 gatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttg 118  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16572745 gatgaatgacgagcataatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttg 16572844  T
Q  119 actgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcag 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16572845 actgagaaattatccatccttgctaagagtaatgaaagagctacagaagtatgattaggaagtgtcagttggattgcactgccgctccttcaggtggcag 16572944  T
Q  219 gcgtgaagacatgtcctatt 238  Q
    ||||||||||||||||||||    
T  16572945 gcgtgaagacatgtcctatt 16572964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 16874621 - 16874845
Alignment:
Q  13 gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc 112  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16874621 gagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcaggctttggcgttc 16874720  T
Q  113 gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcagg 212  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||    
T  16874721 gaattgactgagaaattatccatccttgctaagagtaatgaaagagctacagaagcatggttaggaagtgtcggttggattgcactgccgctcctacagg 16874820  T
Q  213 tggcaggcgtgaagacatgtcctatt 238  Q
    |||||||||||||||| |||||||||    
T  16874821 tggcaggcgtgaagac-tgtcctatt 16874845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 16580760 - 16580980
Alignment:
Q  13 gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc 112  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16580760 gagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc 16580859  T
Q  113 gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcagg 212  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||     
T  16580860 gagttgaccgagaaattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcaga 16580959  T
Q  213 tggcaggcgtgaagacatgtc 233  Q
    ||| |||||||||||||||||    
T  16580960 tggtaggcgtgaagacatgtc 16580980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 16614620 - 16614400
Alignment:
Q  13 gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc 112  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16614620 gagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc 16614521  T
Q  113 gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcagg 212  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||     
T  16614520 gagttgaccgagaaattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcaga 16614421  T
Q  213 tggcaggcgtgaagacatgtc 233  Q
    ||| |||||||||||||||||    
T  16614420 tggtaggcgtgaagacatgtc 16614400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 431 - 582
Target Start/End: Original strand, 16581475 - 16581626
Alignment:
Q  431 cttgcttatgaaacttgattggaattaaagatctttatggagctgtatataaactaaagaggaaatttaactgttgtgaacgtcttgtgttaaaatttga 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  16581475 cttgcttatgaaacttgattggaattaaagatctttatggagctgtacataaactaaagaggaaatttaactgttgtgaccatcttgtgttaagatttga 16581574  T
Q  531 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16581575 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 16581626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 431 - 582
Target Start/End: Complemental strand, 16613905 - 16613754
Alignment:
Q  431 cttgcttatgaaacttgattggaattaaagatctttatggagctgtatataaactaaagaggaaatttaactgttgtgaacgtcttgtgttaaaatttga 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  16613905 cttgcttatgaaacttgattggaattaaagatctttatggagctgtacataaactaaagaggaaatttaactgttgtgaccatcttgtgttaagatttga 16613806  T
Q  531 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16613805 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 16613754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 634 - 712
Target Start/End: Complemental strand, 16783242 - 16783164
Alignment:
Q  634 tctatgtgattttgtgtgtaatataatgcaagctgatcctatattttgtgataacttgttgaaaagattacagccacac 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16783242 tctatgtgattttgtgtgtaatataatgcaagctgatcctatattttgtgataacttgttgaaaagattacagccacac 16783164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 16581385 - 16581450
Alignment:
Q  255 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 320  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16581385 tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 16581450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 16613995 - 16613930
Alignment:
Q  255 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 320  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16613995 tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 16613930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 547
Target Start/End: Original strand, 16573652 - 16573712
Alignment:
Q  487 aagaggaaatttaactgttgtgaacgtcttgtgttaaaatttgattgcagttaaaactgaa 547  Q
    ||||||||||| ||||||  |||| |||||||||||||||||  |||||||||||||||||    
T  16573652 aagaggaaattgaactgtgatgaatgtcttgtgttaaaatttacttgcagttaaaactgaa 16573712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 16976983 - 16976916
Alignment:
Q  256 agttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagtta 325  Q
    |||||| |||||||||| ||||||||||| |  ||||||||| |||||||||| | | ||||||||||||    
T  16976983 agttcaccattatataagagttcaacattga--tctacgtttcaattaaactcaagcaataaacaagtta 16976916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 548 - 712
Target Start/End: Original strand, 38942055 - 38942219
Alignment:
Q  548 atacaacgaaacaatcaattgcctgaaacagtaaattactcattatttgaaatgagtgtgaaaattgcatattattatcattctggtctatgtgattttg 647  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||| ||| |||| || ||| || ||||||||||||||||||||||||||||||||||||    
T  38942055 atacaacgaaacaatcaattgcatgaaatagttaattactcattctttcaaatcagagtgtaacttgcatattattatcattctggtctatgtgattttg 38942154  T
Q  648 tgtgtaatataatgcaagctgatcctatattttgtgataacttgttgaaaagattacagccacac 712  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38942155 tgtgtaacataatgcaagctgatcctatattttgtgataacttgttgaaaatattacagccacac 38942219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 233427 - 233279
Alignment:
Q  29 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat 128  Q
    |||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||    
T  233427 gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat 233328  T
Q  129 tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg 177  Q
    |||| ||||||||| |||||||||||||||||||||||| | |||||||    
T  233327 tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg 233279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 21629507 - 21629732
Alignment:
Q  13 gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc 112  Q
    ||||| |||||||  ||||| ||||||  | |||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||| |||||||||    
T  21629507 gagtgtgatgaatggcgagcttcatgctggctgggatcaaccatctgggtgcattgtattccgaaatgttgaacactcaagggtgcaggccttggcgttc 21629606  T
Q  113 gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtg-tcagttggattgcactgccgctccttcag 211  Q
    ||||||||| | ||| |||| |||||||||||||||||||||||||||||| ||| | ||| |||   || || |||||||| || | ||||| ||||||    
T  21629607 gagttgactaataaa-tatctatccttgcaaagagtaatgaaagagctacataagcaaggtcaggcgatgatcggttggattacaataccgctgcttcag 21629705  T
Q  212 gtggcaggcgtgaagacatgtcctatt 238  Q
    |||||| || | |||||||||||||||    
T  21629706 gtggcatgcatcaagacatgtcctatt 21629732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 7392068 - 7392216
Alignment:
Q  29 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat 128  Q
    |||| ||||||||| |||||||| ||| ||||||||||| | |||||||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||    
T  7392068 gagcttcatgcaagctgggatcaaccaactgggtgcattattttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat 7392167  T
Q  129 tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg 177  Q
    |||| ||||||||| |||||||||||||||||||||||| | |||||||    
T  7392168 tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg 7392216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 48298543 - 48298405
Alignment:
Q  29 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat 128  Q
    |||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||    
T  48298543 gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaat 48298444  T
Q  129 tatccatccttgcaaagagtaatgaaagagctacagaag 167  Q
    |||| ||||||||| ||||||||||||||||| ||||||    
T  48298443 tatctatccttgcagagagtaatgaaagagcttcagaag 48298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 10939 - 10841
Alignment:
Q  44 tgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgca 142  Q
    ||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  10939 tgggaccaaccatctggatgcattgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgagaaattatctatccttgca 10841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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