View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16410_low_20 (Length: 262)
Name: NF16410_low_20
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 45894643 - 45894550
Alignment:
| Q |
1 |
aaaaggtcaaacaatttgaaacaggttgtagccagttaagttgtagaggtgcatgtttgaaccctttaaaaagaggtccatattaaggggcacc |
94 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
45894643 |
aaaaggtcaaacaatttgaaacaggctatagccagttaagttgtagaggtgcatgtttggaccctttaaaaagaggtccatattaagggccacc |
45894550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 42592933 - 42593026
Alignment:
| Q |
1 |
aaaaggtcaaacaatttgaaacaggttgtagccagttaagttgtagaggtgcatgtttgaaccctttaaaaagaggtccatattaaggggcacc |
94 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |||| |
|
|
| T |
42592933 |
aaaaggtcaaacaatttgaaacaggctatagccagttaagttgtagaggtgcatgtttggaccctttaaaaagaggtctatattaggggccacc |
42593026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 50302058 - 50302135
Alignment:
| Q |
13 |
aatttgaaacaggttgtagccagttaagttgtagaggtgcatgtttgaaccctttaaaaagaggtccatattaagggg |
90 |
Q |
| |
|
||||||||||||| | ||||| ||| ||| ||||| |||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
50302058 |
aatttgaaacaggctatagccggttgtattggagaggaccatgtttggaccttttaaaaagaggtccatattaggggg |
50302135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 13707612 - 13707477
Alignment:
| Q |
95 |
ttctccaatatcctataatccttttgtgattctaatcctattgcttttaccacaaaaattaacttttttact---aacactacaaaaccatttacctcaa |
191 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||| | || |||||||| ||||||||| |||||||||||||| |
|
|
| T |
13707612 |
ttctccaatatcctatcatccttttgtgattccaatcctattaattttcccacaaaaaatcacatttttactcttaacactacaccaccatttacctcaa |
13707513 |
T |
|
| Q |
192 |
cctcaagaacatcatttatcagacaccaacatcata |
227 |
Q |
| |
|
||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
13707512 |
ccttaagaacttcatttataagacaccaacatcata |
13707477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 35164579 - 35164629
Alignment:
| Q |
35 |
gttaagttgtagaggtgcatgtttgaaccctttaaaaagaggtccatatta |
85 |
Q |
| |
|
||||||||| |||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
35164579 |
gttaagttggagaggtccatgtttgaacctttaaaaaagaggtccatatta |
35164629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 36591357 - 36591307
Alignment:
| Q |
35 |
gttaagttgtagaggtgcatgtttgaaccctttaaaaagaggtccatatta |
85 |
Q |
| |
|
||||||||| |||||| |||||||| ||| || |||||||||||||||||| |
|
|
| T |
36591357 |
gttaagttggagaggtccatgtttggacctttaaaaaagaggtccatatta |
36591307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 24029470 - 24029419
Alignment:
| Q |
34 |
agttaagttgtagaggtgcatgtttgaaccctttaaaaagaggtccatatta |
85 |
Q |
| |
|
|||||||||| |||||| |||||||| ||| || |||||||||||||||||| |
|
|
| T |
24029470 |
agttaagttggagaggtccatgtttggacctttaaaaaagaggtccatatta |
24029419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 20000868 - 20000818
Alignment:
| Q |
35 |
gttaagttgtagaggtgcatgtttgaaccctttaaaaagaggtccatatta |
85 |
Q |
| |
|
||||||||| |||||| |||||||| ||| || |||||||||||||||||| |
|
|
| T |
20000868 |
gttaagttggagaggtccatgtttggacctttaaaaaagaggtccatatta |
20000818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University