View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_low_23 (Length: 209)
Name: NF16410_low_23
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 4569335 - 4569510
Alignment:
| Q |
19 |
gttggtggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaa |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569335 |
gttggtggtgcagcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaa |
4569434 |
T |
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| Q |
119 |
gggagcaatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4569435 |
gggagcaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctcagaaggataacaataagaatta |
4569510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 14704485 - 14704660
Alignment:
| Q |
19 |
gttggtggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaa |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14704485 |
gttggtggtgcagcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaa |
14704584 |
T |
|
| Q |
119 |
gggagcaatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14704585 |
gggagcaatttgagaaaagtcctaagggctattttgctgatttgcatgctgctcagaaggataacaataagaatta |
14704660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 49042715 - 49042877
Alignment:
| Q |
19 |
gttggtggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaa |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49042715 |
gttggtggtggtgcagcaaacaatcccaaagacaatgttggtgctactactaaaggtgatacaatgaaagctcctggtggagatggatccaacatttcaa |
49042814 |
T |
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| Q |
119 |
gggagcaatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggata |
181 |
Q |
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||||| ||||||||||||| || | ||||||||||||||||||||||||| ||| ||||||| |
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| T |
49042815 |
gggaggaatttgagaaaaacccacaaggctattttgctgatttgcatgctgctcaaaaggata |
49042877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 49058563 - 49058738
Alignment:
| Q |
19 |
gttggtggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaa |
118 |
Q |
| |
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||||||| |||||| |||||||||||||| ||||| ||||| | ||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
49058563 |
gttggtgctgctgctgcaaacaatcccaaggacaacgttggcagtaccactaagggtgatacaatgaaagctcctggtggaaatggatccaacatttcaa |
49058662 |
T |
|
| Q |
119 |
gggagcaatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
| |
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||||| |||||| |||||| || | ||||||||||||||||||||| ||| ||| || |||||||| |||||||| |
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| T |
49058663 |
gggaggaatttgtgaaaaacccacaaggctattttgctgatttgcatactgctcaaaaagataacaagaagaatta |
49058738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 22642906 - 22643076
Alignment:
| Q |
24 |
tggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaagggag |
123 |
Q |
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||||||||| ||||||||| |||| ||||| ||||| | ||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
22642906 |
tggtgctgctgcaaacaatgccaaggacaacgttggcagtaccactaaaggtgatacgatgaaagctcctggtgaagatggatccaacatttcaagggag |
22643005 |
T |
|
| Q |
124 |
caatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
22643006 |
caatttgagaaaaatccacaaggctattttgctgatttgcatgctgctcaaaaggataacaagaagaatta |
22643076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 9763805 - 9763635
Alignment:
| Q |
24 |
tggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaagggag |
123 |
Q |
| |
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||||||||| ||||||||||| || ||||| ||||| | ||| ||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
9763805 |
tggtgctgctgcaaacaatccaaaggacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggag |
9763706 |
T |
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| Q |
124 |
caatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
9763705 |
gaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctcaaaaggataacaagaagaatta |
9763635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 9778258 - 9778088
Alignment:
| Q |
24 |
tggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaagggag |
123 |
Q |
| |
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||||||||| ||||||||||| || ||||| ||||| | ||| ||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
9778258 |
tggtgctgctgcaaacaatccaaaggacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggag |
9778159 |
T |
|
| Q |
124 |
caatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
9778158 |
gaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctcaaaaggataacaagaagaatta |
9778088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 9769945 - 9769775
Alignment:
| Q |
24 |
tggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaagggag |
123 |
Q |
| |
|
|||| |||| ||||||||||| || ||||| ||||| | ||| ||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
9769945 |
tggttctgctgcaaacaatccaaaggacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggag |
9769846 |
T |
|
| Q |
124 |
caatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| |
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| T |
9769845 |
gaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctcaaaaggataggaagaagaatta |
9769775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 9783963 - 9783793
Alignment:
| Q |
24 |
tggtgctgcagcaaacaatcccaaagacaatgttggtactactactaaaggtgatacaatgaaagctcctggtggagatggatcaaacatttcaagggag |
123 |
Q |
| |
|
|||| |||| ||||||||||| || ||||| ||||| | ||| ||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||||||| |
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|
| T |
9783963 |
tggttctgctgcaaacaatccaaaggacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggag |
9783864 |
T |
|
| Q |
124 |
caatttgagaaaaatcctaagggctattttgctgatttgcatgctgatcagaaggataacaataagaatta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| |
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|
| T |
9783863 |
gaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctcaaaaggataggaagaagaatta |
9783793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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