View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16410_low_3 (Length: 707)

Name: NF16410_low_3
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16410_low_3
NF16410_low_3
[»] chr4 (5 HSPs)
chr4 (256-690)||(51527554-51527998)
chr4 (587-685)||(52233165-52233263)
chr4 (164-201)||(29815096-29815133)
chr4 (164-201)||(48740567-48740604)
chr4 (164-200)||(40881216-40881252)
[»] chr3 (3 HSPs)
chr3 (165-201)||(48744307-48744343)
chr3 (164-201)||(33994704-33994741)
chr3 (165-201)||(32827327-32827363)
[»] chr1 (4 HSPs)
chr1 (165-201)||(7785298-7785334)
chr1 (165-201)||(26756024-26756060)
chr1 (164-201)||(48242614-48242651)
chr1 (173-201)||(5040599-5040627)
[»] scaffold0058 (1 HSPs)
scaffold0058 (164-201)||(14503-14540)
[»] chr8 (3 HSPs)
chr8 (164-201)||(9014750-9014787)
chr8 (164-201)||(32967300-32967337)
chr8 (164-201)||(44790445-44790482)
[»] chr7 (6 HSPs)
chr7 (164-201)||(7456607-7456644)
chr7 (164-201)||(18235237-18235274)
chr7 (164-201)||(21387503-21387540)
chr7 (173-201)||(2842075-2842103)
chr7 (173-201)||(27234559-27234587)
chr7 (165-201)||(47454052-47454088)
[»] chr6 (1 HSPs)
chr6 (164-201)||(31265826-31265863)
[»] chr2 (2 HSPs)
chr2 (165-202)||(13375211-13375248)
chr2 (165-201)||(28925871-28925907)
[»] chr5 (2 HSPs)
chr5 (165-201)||(6610885-6610921)
chr5 (165-201)||(7613755-7613791)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 256 - 690
Target Start/End: Original strand, 51527554 - 51527998
Alignment:
Q  256 tgggcgcagacttgggagtagggatgtgcatttagca---------gcagcaataaggaaaagacggtgtagtgatttaaaaagcccataatattctgat 346  Q
    ||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51527554 tgggcgcggacttgggagtagggatgtgcatttagcagcagcagcagcagcaataaggaaaagacggtgtagtgatttaaaaagcccataatattctgat 51527653  T
Q  347 cacaatctactccgacccgttttcttcttattagatcaatcacatcaattcaatttccctccaacattttctgaaccctgacattagcacagaaacgatg 446  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  51527654 cacaatctactccgatccgttttcttcttattatatcactcacatcaattcaatttccctccaacattttctgaaccctaacattaccacagcaacgatg 51527753  T
Q  447 atcttattccttgattaatatggtgagtgtgttcacaaactacttccaaaatgagatcgaaacattagaaaaattaaatgtcctatcaactctggtataa 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51527754 atcttattccttgattaatatggtgagtgtgttcacaaactacttccaaaatgagatcgaaacattagaaaaattaaatgtcctatcaactctggtataa 51527853  T
Q  547 ata-tgctagcctatacacctttgcttcctagagtaattaattaaagtattcttagtactgcagtctattccttctgcagcccattttggaagcagatgg 645  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51527854 atactgctagcctatacccctttgcttcctagagtaattaattaaagtattcttagtactgcagtctattccttctgcagcccattttggaagcagatgg 51527953  T
Q  646 aacctttcttctgcttgataccttaggaagatactacttagtagt 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51527954 aacctttcttctgcttgataccttaggaagatactacttagtagt 51527998  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 587 - 685
Target Start/End: Complemental strand, 52233263 - 52233165
Alignment:
Q  587 ttaaagtattcttagtactgcagtctattccttctgcagcccattttggaagcagatggaacctttcttctgcttgataccttaggaagatactactta 685  Q
    |||||| ||| ||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||  |  |||||||  ||||||||| ||||||    
T  52233263 ttaaagcatttttattactgcagcctactccttctccagcccattttggaagcagatggaacctttctttagtatgatacccgaggaagatattactta 52233165  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 29815133 - 29815096
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  29815133 ccactttagatttatgatagtggagaatgcatgaatac 29815096  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 48740567 - 48740604
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  48740567 ccactttacatttatgatagtggagaatgcaccaatac 48740604  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 40881252 - 40881216
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaata 200  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  40881252 ccactttacatttatgatagtggagaatacatcaata 40881216  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 48744307 - 48744343
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48744307 cactttacatttatgatagtggagaatgcatcaatac 48744343  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 33994704 - 33994741
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  33994704 ccactttacatttatgatagtggagaatgcaccaatac 33994741  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 32827363 - 32827327
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  32827363 cactttacatttatgatagtggagaatgcaccaatac 32827327  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 7785334 - 7785298
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7785334 cactttacatttatgatagtggagaatgcatcaatac 7785298  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 26756024 - 26756060
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26756024 cactttatatttatgatagtggagaatgcatcaatac 26756060  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 48242651 - 48242614
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  48242651 ccactttacatttatgatagtggaggatgcatcaatac 48242614  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 5040627 - 5040599
Alignment:
Q  173 atttatgatagtggagaatgcatcaatac 201  Q
    |||||||||||||||||||||||||||||    
T  5040627 atttatgatagtggagaatgcatcaatac 5040599  T

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Target: scaffold0058 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 14503 - 14540
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  14503 ccactttacatttatgacagtggagaatgcatcaatac 14540  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 9014750 - 9014787
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||  |||||||||||||||||||||||||||||    
T  9014750 ccactttgcatttatgatagtggagaatgcatcaatac 9014787  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 32967337 - 32967300
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  32967337 ccactttaaatttatgatagtggagaatggaccaatac 32967300  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 44790482 - 44790445
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  44790482 ccactttacatttatgatagtggagaatgcaccaatac 44790445  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 7456644 - 7456607
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  7456644 ccactttatatttatgatagtggagaatacatcaatac 7456607  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 18235237 - 18235274
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  18235237 ccactttacatttatgatagtggagaatgcaccaatac 18235274  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 21387540 - 21387503
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  21387540 ccactttacatttatgatagtggagaatgcaccaatac 21387503  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 2842103 - 2842075
Alignment:
Q  173 atttatgatagtggagaatgcatcaatac 201  Q
    |||||||||||||||||||||||||||||    
T  2842103 atttatgatagtggagaatgcatcaatac 2842075  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 27234559 - 27234587
Alignment:
Q  173 atttatgatagtggagaatgcatcaatac 201  Q
    |||||||||||||||||||||||||||||    
T  27234559 atttatgatagtggagaatgcatcaatac 27234587  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 47454052 - 47454088
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  47454052 cactttacatttatgatagtggagaatgcaccaatac 47454088  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 31265826 - 31265863
Alignment:
Q  164 ccactttaaatttatgatagtggagaatgcatcaatac 201  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  31265826 ccactttacatttatgatagtggagaatgcaccaatac 31265863  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 13375248 - 13375211
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatacc 202  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  13375248 cactttacatttatgatagtggagaatgcaccaatacc 13375211  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 28925907 - 28925871
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| | |||||||||||||||||||||||||||    
T  28925907 cactttacaattatgatagtggagaatgcatcaatac 28925871  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 6610885 - 6610921
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  6610885 cactttacatttatgatagtggagaatgcaccaatac 6610921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 7613755 - 7613791
Alignment:
Q  165 cactttaaatttatgatagtggagaatgcatcaatac 201  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  7613755 cactttacatttatgatagtggagaatgcaccaatac 7613791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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