View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16410_low_6 (Length: 523)

Name: NF16410_low_6
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16410_low_6
NF16410_low_6
[»] chr4 (5 HSPs)
chr4 (127-247)||(42511056-42511176)
chr4 (411-479)||(42511257-42511326)
chr4 (29-101)||(42510742-42510812)
chr4 (435-481)||(10142634-10142681)
chr4 (436-478)||(13957742-13957785)
[»] chr8 (2 HSPs)
chr8 (435-482)||(9381780-9381828)
chr8 (435-482)||(16729846-16729894)
[»] chr7 (3 HSPs)
chr7 (435-482)||(8113444-8113492)
chr7 (435-478)||(9420799-9420843)
chr7 (435-482)||(20394725-20394773)
[»] chr3 (1 HSPs)
chr3 (435-482)||(44879935-44879983)
[»] chr1 (1 HSPs)
chr1 (435-482)||(44310764-44310812)
[»] chr6 (1 HSPs)
chr6 (440-482)||(11680417-11680460)
[»] chr2 (2 HSPs)
chr2 (435-480)||(14904527-14904573)
chr2 (435-482)||(7444038-7444086)
[»] chr5 (3 HSPs)
chr5 (436-476)||(29789919-29789960)
chr5 (435-482)||(13490506-13490554)
chr5 (435-482)||(43170961-43171009)
[»] scaffold0385 (1 HSPs)
scaffold0385 (435-482)||(1084-1132)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 42511056 - 42511176
Alignment:
Q  127 taaatttattcgtccacataagctcttgcagctcgactttcttcactttggcttatgattactaaagtcttgttggcttgctgcttcttgctcaattagt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  42511056 taaatttattcgtccacataagctcttgcagctcgactttcttcactttggcttatgattactaaagtcttgttggcttggagcttcttgctcaattagt 42511155  T
Q  227 ttattcgttcacataaaataa 247  Q
    ||||| || ||||||||||||    
T  42511156 ttatttgtccacataaaataa 42511176  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 411 - 479
Target Start/End: Original strand, 42511257 - 42511326
Alignment:
Q  411 acaacgtatgaaaataaatcaaatcaccaaaacataataaaatat-gtagaagtatagaacaatagcaca 479  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  42511257 acaacgtctgaaaataaatcaaatcatcaaaacataataaaatatcgtagaagtatagaacaatagcaca 42511326  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 42510742 - 42510812
Alignment:
Q  29 aaaagtaaaatgtcttcagaagaaaatggtatgacttgactgcagtatgagacatcgtagcattataacaaaa 101  Q
    ||||||||||||||   ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  42510742 aaaagtaaaatgtcg--agaagaaaatggtatgattcgactgcagtatgagacatcgtagcattataacaaaa 42510812  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 10142681 - 10142634
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatg 481  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||||    
T  10142681 caccaaaacaaaataaaatgtcgtagaagtatagaacaatagcacatg 10142634  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 13957785 - 13957742
Alignment:
Q  436 accaaaacataataaaatat-gtagaagtatagaacaatagcac 478  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  13957785 accaaaacaaaataaaatatcgtagaagtatagaacaatagcac 13957742  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 9381780 - 9381828
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  9381780 caccaaaacaaaataaagtatcgtagaagtatagaacaatagcacatgc 9381828  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 16729894 - 16729846
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||||| ||||||||| |||| ||||||||||||    
T  16729894 caccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgc 16729846  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 8113444 - 8113492
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  8113444 caccaaaacaaaataaaatattgtagaagtatagaacaataacacatgc 8113492  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 9420843 - 9420799
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcac 478  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||    
T  9420843 caccaacacataataaaatatcgtagaagtagagaacaatagcac 9420799  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 20394725 - 20394773
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||||| ||||||||| |||| ||||||||||||    
T  20394725 caccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgc 20394773  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 44879983 - 44879935
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  44879983 caccaaaacaaaataaaatattgtagaagtatagaacaataacacatgc 44879935  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 44310812 - 44310764
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  44310812 caccaaaacaaaataaaatatcgtagaagtagagaacaatagcacatgc 44310764  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 11680417 - 11680460
Alignment:
Q  440 aaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  11680417 aaacaaaataaaatatcgtagaagtatagaacaatagcacatgc 11680460  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 14904573 - 14904527
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacat 480  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||||    
T  14904573 caccaaaacataataaaatatcatagaagtatagaataatagcacat 14904527  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 7444086 - 7444038
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||||| ||||||||| |||| ||||||||||||    
T  7444086 caccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgc 7444038  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 476
Target Start/End: Complemental strand, 29789960 - 29789919
Alignment:
Q  436 accaaaacataataaaatat-gtagaagtatagaacaatagc 476  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  29789960 accaaaacaaaataaaatatcgtagaagtatagaacaatagc 29789919  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 13490554 - 13490506
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||| | |||||||||||||| ||||||||||||    
T  13490554 caccaaaacaaaataaaatgtcgtagaagtatagaaaaatagcacatgc 13490506  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 43170961 - 43171009
Alignment:
Q  435 caccaaaacataataaaatat-gtagaagtatagaacaatagcacatgc 482  Q
    |||||||||| |||||||||| ||||||| || ||||||||||||||||    
T  43170961 caccaaaacaaaataaaatatcgtagaagcatggaacaatagcacatgc 43171009  T

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Target: scaffold0385 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 1132 - 1084
Alignment:
Q  435 caccaaaacataataaaatatg-tagaagtatagaacaatagcacatgc 482  Q
    |||||||||| ||||||||||  ||||| ||||||||||||||||||||    
T  1132 caccaaaacaaaataaaatatcatagaaatatagaacaatagcacatgc 1084  T

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