View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_low_7 (Length: 477)
Name: NF16410_low_7
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 39228250 - 39227786
Alignment:
| Q |
1 |
tctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
39228250 |
tctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactggatatatcaaacttgaatgtttc |
39228151 |
T |
|
| Q |
101 |
tggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228150 |
tggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcat |
39228051 |
T |
|
| Q |
201 |
ttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228050 |
ttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttg |
39227951 |
T |
|
| Q |
301 |
gaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227950 |
gaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatacc |
39227851 |
T |
|
| Q |
401 |
ttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227850 |
ttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
39227786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 25547449 - 25546985
Alignment:
| Q |
1 |
tctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatatttc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
25547449 |
tctccaactacatgtccctttgtactacttggtatgatattcaatgtgacacaaacaatagttctgttttgtcactagatatatcaaacttgaatgtttc |
25547350 |
T |
|
| Q |
101 |
tggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547349 |
tggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcat |
25547250 |
T |
|
| Q |
201 |
ttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttg |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547249 |
ttgaaagagcttgaagttcttgatgcttacaacaatgagttcaattgttcactacctcttggtgtcactgagttacctaaactcaagtacttgaattttg |
25547150 |
T |
|
| Q |
301 |
gaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547149 |
gaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatacc |
25547050 |
T |
|
| Q |
401 |
ttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25547049 |
ttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
25546985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 16733310 - 16733375
Alignment:
| Q |
351 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
416 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
16733310 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
16733375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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