View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_low_8 (Length: 451)
Name: NF16410_low_8
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 417189 - 417616
Alignment:
| Q |
8 |
gagcacagatattatatagtctctgcactgcacaggaaacagcaatgcaacaataacaattagtaagcagaaccatgacatcactaacagaaattgggat |
107 |
Q |
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| T |
417189 |
gagcacagatattatatagtctctgcactgcacaggaaacagcaatgcaacaataataattagtaagcagaaccatgacatcactaacagaaattgggat |
417288 |
T |
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| Q |
108 |
aacaccattataactaaatgacactaattcttgtaacttgctgctgtgatccatattgttgcagcagcaggtcaattgttcctcttgataccaacacaac |
207 |
Q |
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| T |
417289 |
aacaccattataactaaatgacactaattcttgtaacttgctgctgtgatccatattgttgcagcagcaggtcaattgttcctcttgataccaacacaac |
417388 |
T |
|
| Q |
208 |
acttgatcctttt-ttatgtcacacttactccacctgctacttctatattgtttgaccctattcttgttaagttcttgtctcaattaccttgagtgctgt |
306 |
Q |
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| T |
417389 |
acttgatcctttttttatgtcacacttactccacctgctacttctatattgtttgaccctattcttgttaagttcttgtctcaattaccttgagtgctgt |
417488 |
T |
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| Q |
307 |
tgttttttccactccactagtaatacattacatgtccatcatccctctccttgtttcgttttccgcatgaacttgtctccctactcaacgccatttggga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
417489 |
tgttttttccactccactagtaatacattacatgtccatcatccctctccttgtttcgttttccgcatgaacttgtctccctactcaacgccatttggga |
417588 |
T |
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| Q |
407 |
gtccataatttgatatcagcagactgat |
434 |
Q |
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| T |
417589 |
gtccataatttgatatcagcagactgat |
417616 |
T |
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