View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16410_low_9 (Length: 445)
Name: NF16410_low_9
Description: NF16410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16410_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 17402335 - 17402748
Alignment:
| Q |
13 |
aatatcggatgaagggtaatggtcccaattactcgacaaggtgaataagttcgggttcaaggagccaataattgttgaaacggaaattgcagtgaggctg |
112 |
Q |
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| T |
17402335 |
aatatcggatgaagggtaatggtcccaattactcgacaaggtgaataagttctggttcaaggagccaataattgttgaaacggaaattgcggtggggctg |
17402434 |
T |
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| Q |
113 |
cctccatgggacggggtcaagttggaataacaacgaggtgtgatctgagataggagccactagagtttggagagatgcatgaggataaagcacttgccaa |
212 |
Q |
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| T |
17402435 |
cctccatgggacggggtcaagtttgaataacaacgaggtgtgatctgagataggagccactagagtttggagagatgcatgaggataaagcacttgccaa |
17402534 |
T |
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| Q |
213 |
gaagaagtaacaagtgcacgctcaaggagagcttctttcgaagacgacgtgccaatactcttgaaccatgtaaattggtaaccaagga-gggcatatact |
311 |
Q |
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| T |
17402535 |
gaagaagtaacaagtgcacgctcaaggagagcttctttcgaagacgacgtgccaatactcttgaaccatgtaaattggtaaccaaggaggggcatatact |
17402634 |
T |
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| Q |
312 |
acaaattacaatcaaagactgcgtttttgaaaccacgaataagccatgatggtcgaggatggccgccgcgtttatcttctgaagagaaacggtcattgaa |
411 |
Q |
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| T |
17402635 |
acaaattacaatcagagactgcatttttgaaaccacgaataagccatgatggtcgatgatggccgccgcgtttatcttctgaagagaaatggtcattgaa |
17402734 |
T |
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| Q |
412 |
gtctccgataatgc |
425 |
Q |
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| T |
17402735 |
gtctccgataatgc |
17402748 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 27646753 - 27646843
Alignment:
| Q |
207 |
tgccaagaagaagtaacaagtgcacgctcaaggagagcttctttcgaagacgacgtgccaatactcttgaaccatgtaaattggtaaccaa |
297 |
Q |
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|||||||||||||| ||||| ||||| ||||| | |||||||| ||||| | || |||||||| |||||||| ||||||||||| |||| |
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| T |
27646753 |
tgccaagaagaagtgacaagggcacgatcaagacgtgcttctttggaagaggcagtaccaatacttttgaaccaagtaaattggtatccaa |
27646843 |
T |
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