View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16411_high_2 (Length: 466)
Name: NF16411_high_2
Description: NF16411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16411_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 34461418 - 34460996
Alignment:
| Q |
18 |
ggttgaaatgcaacaatgctcattaagagattacaaggtcatggacaagttaacagttttttccgtctctattaccatgattttataagaaacggtggtt |
117 |
Q |
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| T |
34461418 |
ggttgaaatgcaacaatgctcattaagagattacaaggtcatggacaagttaacagtttattccgtctctattagcatgattttataagaaacggtggtt |
34461319 |
T |
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| Q |
118 |
ttgttataaagaaacgggaaaataaccaaaaatatttcaactttgttggttcactttctttggcaagaaacattatcaaaatggcacactttttgttact |
217 |
Q |
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| T |
34461318 |
ttgttatatagaaacgggaaaataaccaaaaatatttcaactttgttggttcactttctttggcaagaaacattatcaaaatggcacactttttgttact |
34461219 |
T |
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| Q |
218 |
actctgtccacaacttattcagccaagaaataaaagtggggctaaaaattgaattggcaaacctgatgttttcatttattgcaagatacgaaaattagta |
317 |
Q |
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| T |
34461218 |
actctgtccacaacttattcagccatgaaataaaagtggggctaaaaattgaattggcaaacctgatgttttcatttattgcaagatacgaaaattagta |
34461119 |
T |
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| Q |
318 |
ctaatacattactataacctcaaacaaaccatcgttctttattttatggtgtcgaa-----------attaaaaaggatttcaatcattttagaaacaaa |
406 |
Q |
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| T |
34461118 |
ctaatacattactataacctcaaacaaaccatcgttttttattttatggtgtcgaaaactaattttgattaaaaaggatttcaatcattttagaaacaaa |
34461019 |
T |
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| Q |
407 |
actaattttgattgtcataaggt |
429 |
Q |
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| T |
34461018 |
actaattttgattgtcataaggt |
34460996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 34482659 - 34482575
Alignment:
| Q |
232 |
ttattcagccaagaaataaaagtggggctaaaaattgaattggcaaacctgatgttttcatttattgcaagatacgaaaattagta |
317 |
Q |
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| T |
34482659 |
ttattcaaacaagaaataaaagtggggcaataaaatgaattggc-aacttgatgttttcatttaatggaagatataaaaattagta |
34482575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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