View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16411_high_3 (Length: 436)
Name: NF16411_high_3
Description: NF16411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16411_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 14923068 - 14923364
Alignment:
| Q |
17 |
atcacaaagtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatactattttaattactaattcatttat |
116 |
Q |
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| T |
14923068 |
atcacaaagtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatacgattttaa---ctaattcatttat |
14923164 |
T |
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| Q |
117 |
ccatctatagctatatcnnnnnnnnctttccccttaaatatctatagctacgtagcaattgtaaattcttaatcttttagtaatttgcttagcaatctgt |
216 |
Q |
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| T |
14923165 |
tcatctatagctatatcttttttttctttcccctcaaatatctatagctatgtagcaattgtaaattcttaatcttttagtaatttgcttagcaatctgt |
14923264 |
T |
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| Q |
217 |
acatctttcttaatacgacacaacatattgataaaggtatataccagacaattagaggaggggttcaccaatctccactttcctcttttcatacttaata |
316 |
Q |
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| T |
14923265 |
acatctttcttaatacgacacaacatattgataaagg----taccagacaatcaaaggaggggttcaccaatctccactttcctcttttcatacttaata |
14923360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 14914630 - 14914866
Alignment:
| Q |
24 |
agtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatactattttaattactaattcatttatccatcta |
123 |
Q |
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| T |
14914630 |
agtcaagggaaattgaaatattttaaacttttgactcgagcactattaagcaattttaaactctcatactatttta---accaattcattgatccatcta |
14914726 |
T |
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| Q |
124 |
tagctatatc--nnnnnnnnctt----tccccttaaatatctatagctacgtagcaattgtaaattcttaatcttttagtaatttgc-ttagcaatctgt |
216 |
Q |
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| T |
14914727 |
gagctgtatcttttttttttctttttcttccctcaaacatctatagcta---------tgtaaattcttaattttttagtaattcgctttagcaatatgt |
14914817 |
T |
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| Q |
217 |
acatctttcttaatacgacacaacatattgataaaggtatataccagac |
265 |
Q |
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| T |
14914818 |
acatcttgcttaatacgacacgacatattgataaagctctataccagac |
14914866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 14923412 - 14923478
Alignment:
| Q |
353 |
attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttt |
419 |
Q |
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| T |
14923412 |
attataatataatgaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttt |
14923478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 14914926 - 14914989
Alignment:
| Q |
353 |
attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttt |
419 |
Q |
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| T |
14914926 |
attataatataatcaaaccctatatctaagatatattccc---aacacttcttcattgtcatctttt |
14914989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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