View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16411_high_4 (Length: 271)
Name: NF16411_high_4
Description: NF16411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16411_high_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 37070120 - 37070379
Alignment:
| Q |
12 |
agagataaagaatggaacactcgtgaagtttcttcaacagaatgacttttttataagccagctctgcaacagattaactatgccaactaattcaaccaag |
111 |
Q |
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| T |
37070120 |
agagataaagaatggaaaactcgtgaagtttcttcaacagaatgacttttttataagccagctctgcaacagattaactatgccaactaattcaaccaag |
37070219 |
T |
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| Q |
112 |
tcctagactcaaaattgatttatgcggacattgatgaattggaacattttcatagacaaggttccctgagtctatgctgtcatacactgagtatgaattg |
211 |
Q |
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| T |
37070220 |
tcctagactcaaaattgatttatgcggacattgatgaattggaacattttcatagacaaggttccctgagtctatgttatcatacactgagtatgaattg |
37070319 |
T |
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| Q |
212 |
caattactactagaataatcaaaactaggctgttcaaaatgaatacaggttgaaaattgt |
271 |
Q |
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| T |
37070320 |
cgattactactagaataatcaaaaataggctattcaaaatgaatacaggttgaaaattgt |
37070379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 38238057 - 38238306
Alignment:
| Q |
20 |
agaatggaacactcgtgaagtttcttcaacagaatgacttttttataagccagctctgcaacagattaactatgccaactaattcaaccaagtcctagac |
119 |
Q |
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| T |
38238057 |
agaatggaaaactcgtgaaatttcattaacatgatgactttat-ataaactagctctgcaacagattaacaatgccaactaattcaacaaagtcctagac |
38238155 |
T |
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| Q |
120 |
tcaaaattgatttatgcggacattgatgaattggaacattttcatagacaaggttccctgagtctatgctgtcatacactgagtatgaattgcaattact |
219 |
Q |
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| T |
38238156 |
tcaaaattgatttatgtgaacattgatgaattggaacactttcattgacaaggttccccaagtct-tgttatcatataccgaatatgaattttgattact |
38238254 |
T |
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| Q |
220 |
actagaataatcaaaactaggctgttcaaaatgaatacaggttgaaaattgt |
271 |
Q |
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| T |
38238255 |
actagaataatcaaaactaggctattcacaatgaatacaggttgagaattgt |
38238306 |
T |
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