View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16411_low_1 (Length: 477)
Name: NF16411_low_1
Description: NF16411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16411_low_1 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 477
Target Start/End: Complemental strand, 32704295 - 32703817
Alignment:
| Q |
7 |
gagagaagaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
32704295 |
gagagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcg |
32704196 |
T |
|
| Q |
107 |
atctcagata---tcaaggttttggaaaagatttgtcgagagcttaatcataaatctcctgaatata----aggtctttttgaacgatctactagggaac |
199 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
32704195 |
atctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaac |
32704096 |
T |
|
| Q |
200 |
gacttcaacaatgtatttaggtccctcgacatgttcaaagaaaatctacaggctgaa-tggaaaccgaaatggcaccttgctacttctttggggttcctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
32704095 |
gacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctacaggctgaaatggaaaccgaaatggtaccttgctacttctttggggttcccg |
32703996 |
T |
|
| Q |
299 |
gttccttctatggcaggatttttcctaataaaagtttgcattctgttcattcctcttatagccttcagtttctaactaaggtttgtttacatgaactctc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
32703995 |
gttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttaagtttctatctaaggtttgtttacatgaactctc |
32703896 |
T |
|
| Q |
399 |
ttttcttattcttttgtttgttacaattcttttttgtattctatgtatctttaactagcttttcacctaaataccaaat |
477 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32703895 |
ttttcttaatcttttgtttgttacaattcttttttgtattctatgtatctttaactagcttttcacctaaataccaaat |
32703817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 32628067 - 32627705
Alignment:
| Q |
7 |
gagagaagaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtg |
106 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||| |||||| || ||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
32628067 |
gagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtg |
32627968 |
T |
|
| Q |
107 |
atctcaga---tatcaaggttttggaaaagatttgtcgagagcttaatcataaatctcctgaatataaggtctttttgaacgatctactagggaacgact |
203 |
Q |
| |
|
|||| ||| |||||| ||| |||||||| |||||||| | ||||||||||||||||| ||||||| | | | |||||||||||||| || || |||| |
|
|
| T |
32627967 |
atcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgact |
32627868 |
T |
|
| Q |
204 |
tcaacaatgtatttaggtccctcgacatgttcaaagaaaatctacaggctg-aatggaaaccgaaatggcaccttgctacttctttggggttcctggttc |
302 |
Q |
| |
|
|||||| |||||| |||||| ||||| ||||||||||| |||| | || ||||| || ||||||| || |||| ||||| || ||||||||||| |
|
|
| T |
32627867 |
tcaacaccatatttacgtcccttgacattttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctcaggagttcctggttc |
32627768 |
T |
|
| Q |
303 |
cttctatggcaggatttttcctaataaaagtttgcattctgttcattcctcttatagccttca |
365 |
Q |
| |
|
||| |||| || ||||||||| | |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32627767 |
ctttcatggtagaatttttcctcttcaaagtttgcattttgttcattcctcttatagccttca |
32627705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 53 - 387
Target Start/End: Complemental strand, 32709959 - 32709621
Alignment:
| Q |
53 |
agcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagctta |
149 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||| ||||||||| |||||||| ||||||||||| | | |
|
|
| T |
32709959 |
agcttagcaattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga |
32709860 |
T |
|
| Q |
150 |
atcataaatctcctgaatataaggtctttttgaacgatctactagggaacgacttcaacaatgtatttaggtccctcgacatgttcaaagaaaatctaca |
249 |
Q |
| |
|
||||| ||||||| ||||| |||||||| ||||||||| | | || ||||||||||| || | ||||| || || || | |||||| | | || || |
|
|
| T |
32709859 |
atcatgaatctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgca |
32709760 |
T |
|
| Q |
250 |
ggctg-aatggaaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattctgttcat |
348 |
Q |
| |
|
| || || ||||| ||||||| | || || | | ||| ||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||| |
|
|
| T |
32709759 |
cggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccat |
32709660 |
T |
|
| Q |
349 |
tcctcttatagccttcagtttctaactaaggtttgttta |
387 |
Q |
| |
|
|||||||| |||||| || ||| |||||||||||||| |
|
|
| T |
32709659 |
tcctcttacagccttatgtggctatctaaggtttgttta |
32709621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 7297954 - 7297862
Alignment:
| Q |
275 |
cttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattctgttcattcctcttatagccttcagt |
367 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| | || ||||||||||| |||||| |||| ||||||||||| | |||||||||| |
|
|
| T |
7297954 |
cttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattcattcctctcacagccttcagt |
7297862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 7298174 - 7298116
Alignment:
| Q |
59 |
gcaattgcagacttgggttgctcttatggaccaaacactttgttggtgatctcagatat |
117 |
Q |
| |
|
||||||||||| || ||||| |||| |||||||||||||||||| ||| | |||||||| |
|
|
| T |
7298174 |
gcaattgcagatttaggttgttcttctggaccaaacactttgtttgtggtatcagatat |
7298116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 7293481 - 7293445
Alignment:
| Q |
274 |
ccttgctacttctttggggttcctggttccttctatg |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7293481 |
ccttgctacttctttggtgttcctggttctttctatg |
7293445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 52 - 387
Target Start/End: Complemental strand, 5811667 - 5811328
Alignment:
| Q |
52 |
aagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagctt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||| | |||||| |||||||||| ||| |
|
|
| T |
5811667 |
aagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactt |
5811568 |
T |
|
| Q |
149 |
aatcataaatctcctgaatataaggtctttttgaacgatctactagggaacgacttcaacaatgtatttaggtccctcgacatgttcaaagaaaatctac |
248 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| || || || |||||| | ||||||| |||||| |||| ||||||||||| |||| |
|
|
| T |
5811567 |
aatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactac |
5811468 |
T |
|
| Q |
249 |
aggctg-aatggaaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattctgttca |
347 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||||||| ||| |||||||| ||||| ||| | ||||| ||||| ||||||||||||||| ||| || |
|
|
| T |
5811467 |
gtaatgaaatggaaactgaaatgggtccttgctacttctctggtgttcctggatccttttatagtaggatctttccagataaaagtttgcattttgtgca |
5811368 |
T |
|
| Q |
348 |
ttcctcttatagccttcagtttctaactaaggtttgttta |
387 |
Q |
| |
|
||| ||||| || ||||| | || |||||||||||||| |
|
|
| T |
5811367 |
ttcttcttacagtcttcaatggttatctaaggtttgttta |
5811328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 52 - 387
Target Start/End: Complemental strand, 27736986 - 27736647
Alignment:
| Q |
52 |
aagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagctt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||| |||||| | | ||||||| |||||| || || | |
|
|
| T |
27736986 |
aagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcat |
27736887 |
T |
|
| Q |
149 |
aatcataaatctcctgaatataaggtctttttgaacgatctactagggaacgacttcaacaatgtatttaggtccctcgacatgttcaaagaaaatctac |
248 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| ||||||| || || ||||||||||| ||||| | |||||| |||| |||||||| || |||| |
|
|
| T |
27736886 |
catcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactac |
27736787 |
T |
|
| Q |
249 |
aggctgaa-tggaaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattctgttca |
347 |
Q |
| |
|
| |||| ||||||| |||| | || |||||||||| ||| ||||||||||| || |||||||| |||||||| |||| |||||||||| |||||| |
|
|
| T |
27736786 |
gtgatgaaatggaaactaaaataggcccgtgctacttctatggagttcctggttcattttatggcagaatttttccagataatagtttgcattttgttca |
27736687 |
T |
|
| Q |
348 |
ttcctcttatagccttcagtttctaactaaggtttgttta |
387 |
Q |
| |
|
|||||| ||||| ||||| | ||| |||||||||||||| |
|
|
| T |
27736686 |
ttcctcgtatagtcttcaatggctatctaaggtttgttta |
27736647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 63 - 387
Target Start/End: Original strand, 20115800 - 20116128
Alignment:
| Q |
63 |
ttgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagcttaatcataaatc |
159 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||| ||||| ||| | |||||| |||| |
|
|
| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
|
| Q |
160 |
tcctgaatataaggtctttttgaacgatctactagggaacgacttcaacaatgtatttaggtccctcgacatgttcaaagaaaatctacaggctgaa-tg |
258 |
Q |
| |
|
|||||||||| | |||| ||||||||||||| || |||||||||||| |||||| |||||| |||| ||||||||||| || |||| || |
|
|
| T |
20115900 |
tcctgaatatgatgtctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaagctttctaatgaattg |
20115999 |
T |
|
| Q |
259 |
gaaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattctgttcattcctcttata |
358 |
Q |
| |
|
|||| |||||| ||||||||||||| ||| ||||| |||||||| |||||||| ||||| |||||| | ||||| |||| ||||||||||| |||| |
|
|
| T |
20116000 |
gaaaataaaatgggtccttgctacttctctggtgttcccggttccttttatggcagaattttccctaatgagagtttacatttagttcattcctcatata |
20116099 |
T |
|
| Q |
359 |
gccttcagtttctaactaaggtttgttta |
387 |
Q |
| |
|
|| |||| | || |||||||||||||| |
|
|
| T |
20116100 |
gcattcattggttatctaaggtttgttta |
20116128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 355
Target Start/End: Complemental strand, 21943859 - 21943575
Alignment:
| Q |
63 |
ttgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagcttaatcataaatc |
159 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||| ||||||||||||||||| || ||| || ||| |||||||| |||||| |||| | |||||| |||| |
|
|
| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
|
| Q |
160 |
tcctgaatataaggtctttttgaacgatctactagggaacgacttcaacaatgtatttaggtccctcgacatgttcaaagaaaatctacaggctgaatgg |
259 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| || ||||| |||||||| |||||||||||||| || | ||||||||||| || || |
|
|
| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact---------ttgt |
21943669 |
T |
|
| Q |
260 |
aaaccgaaatggcaccttgctacttctttggggttcctggttccttctatggcaggatttttcctaataaaagtttgcattctgttcattcctctt |
355 |
Q |
| |
|
|| ||||| | ||||||||||||||||| ||||| |||||||| |||||||| ||||||||| | |||||||||||| | ||||| |||||| |
|
|
| T |
21943668 |
aa--tgaaattggtccttgctacttctttggtgttcccggttccttttatggcagaatttttccttaccaaagtttgcattttattcatgcctctt |
21943575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 8028972 - 8029018
Alignment:
| Q |
62 |
attgcagacttgggttgctcttatggaccaaacactttgttggtgat |
108 |
Q |
| |
|
|||||||| |||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
8028972 |
attgcagatttgggttgttcttctgggccaaacactttgttggtgat |
8029018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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