View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16412_low_2 (Length: 269)

Name: NF16412_low_2
Description: NF16412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16412_low_2
NF16412_low_2
[»] chr3 (4 HSPs)
chr3 (16-259)||(27253070-27253313)
chr3 (16-235)||(27246290-27246509)
chr3 (23-206)||(27240765-27240951)
chr3 (23-206)||(27257367-27257553)
[»] chr8 (2 HSPs)
chr8 (56-123)||(7500667-7500734)
chr8 (40-144)||(8057274-8057381)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 27253070 - 27253313
Alignment:
Q  16 catcatgccccgcctcgatggcacaaccttaaccatattatcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaac 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27253070 catcctgccccgcctcgatggcacaaccttaaccatattatcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaac 27253169  T
Q  116 atatgcacttcaacatggccttctttgctattggatcccatagctaacaacgtcatctccacttttcccggtggttaccattccttcttcttcttcaacc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  27253170 atatgcacttcaacatggccttctttgctattggatcccatagctaacaacgtcatctccacttttcccggtggttaccgttccttcttctccttcaacc 27253269  T
Q  216 atcacaataataattcttactcttggtatctttttgcagaatta 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27253270 atcacaataataattcttactcttggtatctttttgcagaatta 27253313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 27246290 - 27246509
Alignment:
Q  16 catcatgccccgcctcgatggcacaaccttaaccatattatcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaac 115  Q
    |||| |||||||||||||||| ||||||||||||   || ||||  ||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  27246290 catcctgccccgcctcgatggaacaaccttaaccgccttctcctccgtatcttcagaactccgccacatgatctgcaacgacaaagatttatggcggaac 27246389  T
Q  116 atatgcacttcaacatggccttctttgctattggatcccatagctaacaacgtcatctccacttttcccggtggttaccattccttcttcttcttcaacc 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||    
T  27246390 atatgcacctcaacatggccttctttgctattggatcccatagctaacaacgtcatctccactttccctggtggttaccattccttcttctccttctacc 27246489  T
Q  216 atcacaataataattcttac 235  Q
    |||  |||||||||| ||||    
T  27246490 atcgtaataataattattac 27246509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 27240765 - 27240951
Alignment:
Q  23 ccccgcctcgatggcacaaccttaaccatattatcctgtgtatcttcagaactccgccacatgatctgc---aacaacgaagatctatggcggaacatat 119  Q
    ||||||||||| ||||||||||||| | | |||| || ||||| |||||||||||| |||||||| |||   ||||||||||||||||||||||||||||    
T  27240765 ccccgcctcgacggcacaaccttaatcgtcttattctctgtatgttcagaactccgtcacatgatttgccacaacaacgaagatctatggcggaacatat 27240864  T
Q  120 gcacttcaacatggccttctttgctattggatcccatagctaacaacgtcatctccacttttcccggtggttaccattccttcttct 206  Q
    |||| ||||  ||||||||||| ||   |||||| || | | ||||||||||||||||||| || |||||||||| |||||| ||||    
T  27240865 gcacctcaaagtggccttctttactgaaggatcctattgttcacaacgtcatctccactttccctggtggttaccgttcctttttct 27240951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 27257367 - 27257553
Alignment:
Q  23 ccccgcctcgatggcacaaccttaaccatattatcctgtgtatcttcagaactccgccacatgatctgcaaca---acgaagatctatggcggaacatat 119  Q
    ||||| ||||| ||||||||||||||| | ||||||| ||| | ||||||||| || |||||||| ||| |||   ||||||||||||||||||||||||    
T  27257367 ccccgtctcgacggcacaaccttaaccgtcttatcctctgtgtgttcagaacttcgtcacatgatttgccacagcaacgaagatctatggcggaacatat 27257466  T
Q  120 gcacttcaacatggccttctttgctattggatcccatagctaacaacgtcatctccacttttcccggtggttaccattccttcttct 206  Q
    |||| ||||| |||||||||||||| |||||||| || | | ||||||| ||||| ||||| || || ||||||| |||||||||||    
T  27257467 gcacctcaacgtggccttctttgctgttggatcctatcgttcacaacgttatctctactttccctggaggttaccgttccttcttct 27257553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 7500734 - 7500667
Alignment:
Q  56 tcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaacatatgcac 123  Q
    |||||||||| ||| || || |||||| |||||||||||||||| ||  ||||||||||||| |||||    
T  7500734 tcctgtgtatgttccgaccttcgccacttgatctgcaacaacgaggaattatggcggaacatttgcac 7500667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 8057274 - 8057381
Alignment:
Q  40 aaccttaaccatattatcctgtgtatcttcagaactccgccacatgatctgca---acaacgaagatctatggcggaacatatgcacttcaacatggcct 136  Q
    |||||| | ||| |||||||  || ||||| ||| ||||||||||||||||||   ||||||| ||||||||| ||||||  ||||| || || ||||||    
T  8057274 aaccttgatcatgttatcctcagtgtcttctgaattccgccacatgatctgcaacgacaacgaggatctatggtggaacacttgcacctccacctggcct 8057373  T
Q  137 tctttgct 144  Q
    || |||||    
T  8057374 tccttgct 8057381  T

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