View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16413_high_3 (Length: 212)
Name: NF16413_high_3
Description: NF16413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16413_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 23097829 - 23097645
Alignment:
| Q |
11 |
catcatcatcatcgatcgtgaaataataatatcaaaaaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaa |
110 |
Q |
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| T |
23097829 |
catcatcatcatcgatcgtgaaataataatatcaaaaaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaa |
23097730 |
T |
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| Q |
111 |
atggaagaagcaattctattttcctcgcactcacaccttaacaacttcaatatcaatacccaaacaacataaaatcacacaataac |
196 |
Q |
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| T |
23097729 |
atggaagaagcaattctattttcctcgcactcacaccttaacaacttcaatatcaataccc-aacaacataaaatcacacaataac |
23097645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 11828570 - 11828426
Alignment:
| Q |
47 |
aaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaaatggaagaagcaattctattttcctcgcactcacac |
146 |
Q |
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| T |
11828570 |
aaattgaaaaaaca-tgactatgtccagaagtttgtcactagaaccctgtaccttccatttgaagtggaagaagcaattctcttttcctcgcactcacac |
11828472 |
T |
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| Q |
147 |
cttaacaacttcaatatcaatacccaaacaacataaaatcacacaataac |
196 |
Q |
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| T |
11828471 |
cttcagaacttcaatatcaatacc----caacataaaatcacacaataac |
11828426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 47343681 - 47343838
Alignment:
| Q |
33 |
ataataatatcaaaaaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaaatggaagaagcaattctatttt |
132 |
Q |
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||||||||||| |||| |||||||| || |||| |||||||| | ||||| |||||||||||| |||||||||||||||||||| || ||||||| |||| |
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| T |
47343681 |
ataataatatccaaaa-ttgaaaaacca-tgaccatgtccaccactttgttactagaaccctgtcccttccatttgaaatggaacaaccaattctctttt |
47343778 |
T |
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| Q |
133 |
cctcgcactcacaccttaacaacttcaatatcaatacccaaacaacataaaatcacacaataac |
196 |
Q |
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|||||||| |||||||| | |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
47343779 |
cctcgcacacacaccttcataacttcaatatcaatacc----caacataaagtcacacaataac |
47343838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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